Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03352 ATGGTTTCTTCCTCCATTCCATCTCATGCACTATTTCTTGCACTCATGTTCTTTCCTGCCATACTTATGCTACTTCAATTGCCACAAACCAATGGAACAAACTTCTCATACCCTTTAAATTCCACTCTTTCCTATGACACATATGTTGCTTACTCTGCTCAGTCTCCAAATTTTTTAACCCTCACAAGTATATCTGATATATTTGACACCAGTCCTTTATCCATTGCAAGAGCAAGCAacataaaagatgaaaatatgaACCTCATTCCAGGGCAGCTTTTGCTGGTACCTATAACTTGTTATTGCAGTGGAAATGGAAACTACTCTTTTGCCAATATTTCACACTTGATCAAACAAGGTGAAAGTTTCTATTACCTTTCAACCATTTCATATCAGAATCTCACTAATTGGATGACAGTGGAAGATTCAAATCCAAACTTGAATCCATATATGTTGACAGTAGGCACCAAAGTAGTCATTCCTATATTCTGTAGCTGCCCTTCAAAAGGGATTGAGTACTTGATTACTTATGTATGGAAGCCTAATGACAATCTTACCCTTGTAGCTTCCATGTTTGGTGCATCACCACATGACATAATCACTGCAAATGCAAACAAATTTGGTCAAAACTTCACTGCTGCAGCCAACCATCCAGTTTTTATCCCAGTGAAAAACTTACCAGCTCTTTCTCAATTATATTCTTCACTTGAAATAAAGAGAACCAATCATTTTCAGATTATCATTTCCATTGGTATGAGTCTAGGATGCACTCTTCTGATTTCACTATCATTATTACTGGTTTATGTGTATTGTTTGAGGAAAAGAAAGGCTTGTGAGAATAAGTGTGTGCCTTCTAAGTTAATTTCTGAAGTTTCAAACTATGTAAGTAAGCCAGAAGTGTATGAAGTTAGTATGATTATGCAAGCTACAATGAACCTCGATGAACGGTGTAGGATAGGGAAATCGATGTACAAAGCTAAAATAGATGGTCATGTTTTAGCTGTGAAAAATGTAAAGGAAGATATCACAGTCACAGAAGAGTTGATGATTCTACAGAAAGTAAACCATGCAAATCTTGTGAAACTAATTGGTGTCTCTTCAGGATATGATGGTGTAAATCACTTCCTTGTGTATGAATATGCTGAAAATGGATCTCTTTATAACTGGTTGTTCTCTGAGTTTTTCACTCTTAGTTGGAGTCAGAGATTAAGCATAGCAATTGATGTTGCAATTGGTCTGCAATACATGCATGAACACACACAACCAAGTATAGTCCATAGGAAAATTAAATCAAGTAACATTCTTCTTGACTCAAACTTTAAGGCCAAGATATCAAATTTTTCTGTTGCAAGAACTACAAAGAGTCCTATGATAACAAAAGTCGATGTTTTCGCTTATGGGGTGATTCTGTTGGAGTTAATAACAGGAAAGAAGTTTTTGTCATGTAGCGAAAATGCTGATGTTAATATGTTGTGGAAAGATATTAAGGGAGTTTTTGATATAGAAGAAAAGAGAGAGGAAAGTGTTAGAAGATGGATTGATCCAAAGTTGGGAAGTTTTTATAATGTTGTTGAAGCTATGAGTTTGTTCTCTTTGGCTATGAATTGCATAAAAGAACAAGTTTTGGTAAGACCAACTATGGGAGAAGTTGTTCTTAGCCTTTCTCTTCTCACTCAACACTCTCCTACTTTGTTAGAGAGGTCTTGTAATTATGGATTAGATGTTGAGGTTATTACTGGAATGGTTAATTCCATCATAGCTCGTTGA 1767 0.3548 MVSSSIPSHALFLALMFFPAILMLLQLPQTNGTNFSYPLNSTLSYDTYVAYSAQSPNFLTLTSISDIFDTSPLSIARASNIKDENMNLIPGQLLLVPITCYCSGNGNYSFANISHLIKQGESFYYLSTISYQNLTNWMTVEDSNPNLNPYMLTVGTKVVIPIFCSCPSKGIEYLITYVWKPNDNLTLVASMFGASPHDIITANANKFGQNFTAAANHPVFIPVKNLPALSQLYSSLEIKRTNHFQIIISIGMSLGCTLLISLSLLLVYVYCLRKRKACENKCVPSKLISEVSNYVSKPEVYEVSMIMQATMNLDERCRIGKSMYKAKIDGHVLAVKNVKEDITVTEELMILQKVNHANLVKLIGVSSGYDGVNHFLVYEYAENGSLYNWLFSEFFTLSWSQRLSIAIDVAIGLQYMHEHTQPSIVHRKIKSSNILLDSNFKAKISNFSVARTTKSPMITKVDVFAYGVILLELITGKKFLSCSENADVNMLWKDIKGVFDIEEKREESVRRWIDPKLGSFYNVVEAMSLFSLAMNCIKEQVLVRPTMGEVVLSLSLLTQHSPTLLERSCNYGLDVEVITGMVNSIIAR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03352 588 ProSiteProfiles LysM domain profile. 49 96 IPR018392 -
Tsu04g03352 588 Pfam Protein tyrosine and serine/threonine kinase 334 454 IPR001245 GO:0004672|GO:0006468
Tsu04g03352 588 ProSiteProfiles Protein kinase domain profile. 289 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03352 588 SUPERFAMILY Protein kinase-like (PK-like) 322 555 IPR011009 -
Tsu04g03352 588 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 20 588 - -
Tsu04g03352 588 Gene3D Transferase(Phosphotransferase) domain 1 456 561 - -
Tsu04g03352 588 CDD LysM 113 160 IPR018392 -
Tsu04g03352 588 Gene3D Transferase(Phosphotransferase) domain 1 381 455 - -
Tsu04g03352 588 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 20 588 - -
Tsu04g03352 588 Gene3D Phosphorylase Kinase; domain 1 285 380 - -
Tsu04g03352 588 Pfam LysM domain 117 161 IPR018392 -
Tsu04g03352 588 Pfam LysM domain 60 97 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03352 Tsu-Chr4 42705372 42707155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03352 79 557 Receptor kinase-like Gene Family AT3G21630 29.390 8.76e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tsu04g03352 PK_Tyr_Ser-Thr 3.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03352 - - vra:106777834 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03352 04 42705372 42707155 Tsu04g03352 04 42705372 42707155 ECH