Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03350 ATGAATGGAAAATACTTGCATATGCGCTGCTGTGCGCATGTGTTGAATTTAGTAGTGAAAAATGGTTTGAAGGACATTGATGAATCTGTTTCAAGAATTCGTCATGCTGTGTGGTATGTTAGATCTTCTGGATTGAGACTTGATGCATTCAAGTCATATATCGATGAGAGCCTTGAATATAAAGGTTTAGTTTGTCTGGATGTTGAGACTCGTTGGAACTCAACATATTTAATGTTAGTAGCTGCTCTGAAACATAAGACAACATTTGATGAGTTAAGTTTTGAAGATAAAAAGTATGTGAATGAGATGGTAAAAAAGGGAAAAGGTGTCCCGACACAAGGTTCCTCTTATTTAACAAGTAACATTTATATGTTTGAGATCTTGGGTATTGGAAAAAGCATTGTGGAAATGTGTAACTCTGAAGATGTTCATTTACGTTCAACGGCTCAAgcaatgaaaaagaaatatgatAAGTATTGGGGGAATTATAAGAGCATTAACATGATGTTGTTGATTGCTCTAGTATTCGACCCAAGACGCAAGATGAAATTGACTGATTGGATGATGAGGCAATTTTACAGTGAAGATGATTCTGATTCTTTGAAAAAACTGTTAGAGTCTTGCTTAAAGTCTCTCTTTGAGGAATACTATTTTGGAGTTATGCCTCCTCAAGGTAATGTAGAAGCAGCACAAGCTTTGGATAGTGTTAATGATCCTTATGGGCTTAGAGCCTTTTACGTTTCAGACCGGAGCAACGCATCAGATAATGAATTAGATACTTATTTGAGAGAAGACTTAGAGAAAAATATGGAGATAAATGTTCTAGAGTGGTGGAAAGTGAACTCTGGCCGATATCCAATCCTTGCAAACATTGCAAGAGACGTGTTGGCTATACCTATAACTACCGTGGCATCCGAGTCTGCCTTCAGCACTGttggGATTCATTTGATTCCTAATCTTTTCCTGGTAAATTTCGAGATAAGAGATTcgaataataatgataattcaGTGGATGATTTGAATGattttgagagagaagaaattgaTCGTGCAATTGCGCTCTCTCTTGCCGAGGAAGATCCTAAAGGGAAAAAAGTTATAGAGGACGACACTGAatctgaagatgaagaactGTGTCCACTTGATGACGAGGAAGATGAACATGTTAGTGAAGTTCAACAAGATGAAGATGATCATGTTGCTAAAGTTCAACAGGACGAAGAGACAAGCCTCGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTGGTTCACCTCCTCGATCTCAAACCGATTCTATATTTCAACCTTTTACAAACCTCTTTCCGCCTGTATACAGAATCTGTGCTGGATGCGATGCCGAGATTGGCCATGGAAGATTTTTAAGTTGCATGGGAGCTGTATGGCATCCAGAATGTTTTTGCTGCCATGCTTGCAAACTGCCAATCACTGATTACGAGTACTCCATGTCTGGAAATCGCCCTTACCATAAACCGTGCTATAAGGAGCTGCATCACCCAAGATGTGATGTTTGCAAGATATTTATCCCACAAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCACACGAGCGCGATGGCACTCCTCGTTGTTGTAGCTGTCAGAGAATGGAGTCAACGGACACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTGTGCCTTGAATGTCTCGATTCGGCTATTATGGATACTCATGAATGCCAGCCTCTCTATCTTGAAATACAAGAATTTTATGAAGGTTTGCATATGAAAATCGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAAGCCATGGAGGGGGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGTTTGTCAGAAGAGCAAACTGTCCCCACTATTTTGAGGAGACCGAGTATAGGAGCAGGCTACCGCGTCATAGATATGATAACCGAGCCTTTTAGGCTGATACGTCGATGTGAAGTGACAGCCATCCTTGTTCTGTACGGCCTTCCTAGGTATCTTTCTGGTACCATCTATTATCTTTTTTCTTAG 2124 0.3875 MNGKYLHMRCCAHVLNLVVKNGLKDIDESVSRIRHAVWYVRSSGLRLDAFKSYIDESLEYKGLVCLDVETRWNSTYLMLVAALKHKTTFDELSFEDKKYVNEMVKKGKGVPTQGSSYLTSNIYMFEILGIGKSIVEMCNSEDVHLRSTAQAMKKKYDKYWGNYKSINMMLLIALVFDPRRKMKLTDWMMRQFYSEDDSDSLKKLLESCLKSLFEEYYFGVMPPQGNVEAAQALDSVNDPYGLRAFYVSDRSNASDNELDTYLREDLEKNMEINVLEWWKVNSGRYPILANIARDVLAIPITTVASESAFSTVGIHLIPNLFLVNFEIRDSNNNDNSVDDLNDFEREEIDRAIALSLAEEDPKGKKVIEDDTESEDEELCPLDDEEDEHVSEVQQDEDDHVAKVQQDEETSLDEVQLEEDEQLARAIQESLSIGSPPRSQTDSIFQPFTNLFPPVYRICAGCDAEIGHGRFLSCMGAVWHPECFCCHACKLPITDYEYSMSGNRPYHKPCYKELHHPRCDVCKIFIPQNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESTDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVPTILRRPSIGAGYRVIDMITEPFRLIRRCEVTAILVLYGLPRYLSGTIYYLFS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03350 707 PANTHER PROTEIN DA1-RELATED 2 328 703 IPR045218 -
Tsu04g03350 707 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 328 703 - -
Tsu04g03350 707 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 453 483 - -
Tsu04g03350 707 SMART uim 343 362 IPR003903 -
Tsu04g03350 707 SMART uim 417 436 IPR003903 -
Tsu04g03350 707 ProSitePatterns LIM zinc-binding domain signature. 458 492 IPR001781 -
Tsu04g03350 707 MobiDBLite consensus disorder prediction 359 388 - -
Tsu04g03350 707 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 485 540 - -
Tsu04g03350 707 Gene3D Cysteine Rich Protein 455 532 - -
Tsu04g03350 707 Pfam LIM domain 458 512 IPR001781 -
Tsu04g03350 707 ProSiteProfiles LIM domain profile. 456 516 IPR001781 -
Tsu04g03350 707 SUPERFAMILY Ribonuclease H-like 6 314 IPR012337 -
Tsu04g03350 707 Pfam hAT family C-terminal dimerisation region 257 312 IPR008906 GO:0046983
Tsu04g03350 707 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 417 436 IPR003903 -
Tsu04g03350 707 Pfam Domain of unknown function (DUF4413) 114 216 IPR025525 GO:0003677
Tsu04g03350 707 CDD LIM_DA1 458 510 - -
Tsu04g03350 707 SMART lim_4 457 509 IPR001781 -
Tsu04g03350 707 MobiDBLite consensus disorder prediction 370 388 - -
Tsu04g03350 707 Pfam Protein DA1 607 702 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03350 Tsu-Chr4 42686324 42697106 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu04g03350 DUF4413 6.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03350 - - gmx:100806605 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03350 04 42686324 42697106 Tsu04g03350 04 42686324 42697106 ECH
Tsu05g00690 05 5764248 5768928 Tsu04g03350 04 42686324 42697106 PCT