Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03349 ATGGGAATAGCAACAACACAATCATTAGTTCCTTCAACTTTCTCAAATTCATCACACACTTACCAATATCATAATTCCTTTAATTCAATCTTACAAAAGTCTCAAAACTCAACCAATTCTATGTCACAAGATTATCACCACCATCACGACCACCACCAGCAACAAGGAATCTTCAACTTCTCGAACGGATTGGAGAGGTCGAATACTCCATTAGAAAACAACAATTCACCAAACCACCAACAACAAATTCAAAGAGACAAAGTGAGATTACATGGCTTTGACtcacaacaacaaccacaaccaccaccacAACCGTCACTAATAGGCGGTatagaagaagaacaagaagctcTCCCAGTTTACGAAACAACCGGAATGTTGTCCGAGATGTTCAATTTCCCTCACGGAGCCTCTTCTGCAGCCGAATTATTAgaacaacagcagcagcagcaacaacaacaattggCATCAACAAGAACACCACCACCACATGAAATAGCCAATTCCAATGACTGGTACGGTAACAGACAATCAATTTTAACAGATtcaaaaaatcatcatcataataataacCGTGACAGTAGCAGCGGCAGCAACAtatttcatcatcatcagatgTCAAATATGAATGCTGAGTCAGCGGCTGCCATGCAACTTTTTCTCATGAATCCACAAACCACCAGATCCCCTTCTCCTCCACCACAACCTCATCCTTCATCTACTAATTCTTCTACTCTTCACATGTTACTTCCAAATCCTTCAACTACAAATCTTCAAGGTTTTAACTCCGGCGGAGCCGGAGGGTCATTTGGTCAATTCACATGGGGACaagaaggaggaggaggagCAACAACAAGTCATCATCATCAACTCAATAACAACCAACCTGAGATTGCAAGTGTTGTTGAAGGACAAGGTCTTTCATTGTCTTTATCTTCTTCcttacaacaacatcatcattcaGATGAATTAAGAATGGGTGACCCTGctagttttttatattacaatcaAGGAGGAGGAGCAGGAACCTCTTACAAAAATCTTGGTGGTGTTCATCATCATTTACAAGGAGGTGGATTAGGACAAATTAATCATATTCATCATGGACATGTTGGATTTGGTTCAtcctcttctccttcttctttagGTGTTGTTAATGTGTTGAGAAATTCAAAGTATGTTAAAGCTGCTCAAGAATTGCTTGAAGAATTTTGTAGTGTTGGAAGGGGTCAATTCAAGAAGAATAAATTTAGTAGACAATTATCAAACCCTAATTCAAATCAAGGTGGCGGCGGCGGTGGTGGTAGTGTTGGTGgtgcttcttcatcttcttcaaaagATGTTTCACCTTTGTCACCTGCTGATAGGATTGAGCATCAAAGAAGGAAGGTCAAACTTCTAACAATGCTTGACGAGGTGGATAGAAGATACAGTCACTACTGTGAACAAATGCAAATGGTGGTGAATTCATTTGACTTAGTAATGGGATATGGTGCTGCAGTTCCATACACAGCATTAGCACAAAAAGCAATGTCACGCCATTTTCGTTGTTTAAAGGATGCAATAACAGCACAGTTGAAACATAGTTGTGAGTTATTGGGAGAGAAAGATGGTGTAGGAACTTCAGGTTTGACTAAAGGAGAAACACCAAGACTTAAATTGCTTGAACAAAGTTTAAGACAACAAAGAGCTTTTCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGACCACAAAGAGGTTTGCCTGAACGTTCTGTCAATATTTTGAGAGCTTGGCTCTTTGAGCATTTTCTTCACCCGTACCCTAGCGATGCAGATAAGCATCTCTTAGCAAGACAGACTGGCCTTTCCAGAAATCAGGTATCAAACTGGTTCATTAATGCTAGAGTTCGTTTGTGGAAACCTATGGTAGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAAGGATCATCAGAAAGAGATCAAGAAGAAGATAGagaaaataacaacaataacacTAGTGGTCACATATCTACAACTACATCTACAAATATTGCACAAACTCCAACACCaccttcaacaacaacaataacaacaccACAACCTACTAGTAACAACAACAGATCCAACAATATTATTATCAATGCCAATGAAAACGACCCATCACTTACACCAATGATAAATAATAGACAACCCTTCTCGGAAAACCAAGCCGCCACCACAAAAACCACCGTATCTGAGGTGGAGCCACCTATCTCCGACTCAATGGCTATCGATGACACGTGTCGACATGGAAGCTTTGTTACAGCGGAATATGGGTCCACCTCTTCTGACACACTCATTAGATTTGGGACCGCTACTTCTGGTGACGTGTCACTCACTTTAGGGTTACGTCACGCCGGAAATTTGCCGGACAAAACATCACCACCTTTCTCTCTTACAGACTTTGGAggcatttaa 2445 0.3603 MGIATTQSLVPSTFSNSSHTYQYHNSFNSILQKSQNSTNSMSQDYHHHHDHHQQQGIFNFSNGLERSNTPLENNNSPNHQQQIQRDKVRLHGFDSQQQPQPPPQPSLIGGIEEEQEALPVYETTGMLSEMFNFPHGASSAAELLEQQQQQQQQQLASTRTPPPHEIANSNDWYGNRQSILTDSKNHHHNNNRDSSSGSNIFHHHQMSNMNAESAAAMQLFLMNPQTTRSPSPPPQPHPSSTNSSTLHMLLPNPSTTNLQGFNSGGAGGSFGQFTWGQEGGGGATTSHHHQLNNNQPEIASVVEGQGLSLSLSSSLQQHHHSDELRMGDPASFLYYNQGGGAGTSYKNLGGVHHHLQGGGLGQINHIHHGHVGFGSSSSPSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFSRQLSNPNSNQGGGGGGGSVGGASSSSSKDVSPLSPADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMQMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGVGTSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGSSERDQEEDRENNNNNTSGHISTTTSTNIAQTPTPPSTTTITTPQPTSNNNRSNNIIINANENDPSLTPMINNRQPFSENQAATTKTTVSEVEPPISDSMAIDDTCRHGSFVTAEYGSTSSDTLIRFGTATSGDVSLTLGLRHAGNLPDKTSPPFSLTDFGGI 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03349 814 MobiDBLite consensus disorder prediction 61 85 - -
Tsu04g03349 814 MobiDBLite consensus disorder prediction 224 254 - -
Tsu04g03349 814 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 110 800 - -
Tsu04g03349 814 MobiDBLite consensus disorder prediction 666 725 - -
Tsu04g03349 814 ProSiteProfiles 'Homeobox' domain profile. 573 636 IPR001356 GO:0003677
Tsu04g03349 814 SMART prehox3 382 524 IPR006563 -
Tsu04g03349 814 MobiDBLite consensus disorder prediction 418 457 - -
Tsu04g03349 814 SUPERFAMILY Homeodomain-like 578 643 IPR009057 -
Tsu04g03349 814 Gene3D - 579 641 - -
Tsu04g03349 814 MobiDBLite consensus disorder prediction 61 83 - -
Tsu04g03349 814 Pfam Associated with HOX 387 523 IPR006563 -
Tsu04g03349 814 MobiDBLite consensus disorder prediction 418 450 - -
Tsu04g03349 814 MobiDBLite consensus disorder prediction 142 202 - -
Tsu04g03349 814 MobiDBLite consensus disorder prediction 142 180 - -
Tsu04g03349 814 SMART HOX_1 576 640 IPR001356 GO:0003677
Tsu04g03349 814 MobiDBLite consensus disorder prediction 35 54 - -
Tsu04g03349 814 Pfam Homeobox KN domain 593 632 IPR008422 GO:0003677|GO:0006355
Tsu04g03349 814 MobiDBLite consensus disorder prediction 645 725 - -
Tsu04g03349 814 MobiDBLite consensus disorder prediction 240 254 - -
Tsu04g03349 814 CDD homeodomain 576 637 IPR001356 GO:0003677
Tsu04g03349 814 Coils Coil 639 659 - -
Tsu04g03349 814 MobiDBLite consensus disorder prediction 645 665 - -
Tsu04g03349 814 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 110 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03349 Tsu-Chr4 42640718 42650281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03349 382 814 Homeobox Transcription Factor Family AT2G23760 55.031 2.37e-148 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tsu04g03349 POX 2.5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03349 - - mtr:MTR_8g078480 1133.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03349 04 42640718 42650281 Tsu04g03349 04 42640718 42650281 ECH
Tsu05g00689 05 5742353 5751562 Tsu04g03349 04 42640718 42650281 ECH
Tsu05g00689 05 5742353 5751562 Tsu04g03349 04 42640718 42650281 PCT