Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g03343 | ATGGAAAAACTGATTTGTATGGAAAATGCTGAAGATGATATAATGCAACTTGACGATGAATCTAGTGACGATTCATTACTTGTAATGCAAGTACCAGCTCAGGTAGAAAATCAAGTTCAAGTGCTTGATAATGTCAATGCTAATGATCAGGTAGAAAACCAAGTTCAACTGCTAgagaatgagaatgagaatgtTAATGTTAATGATCAGATAGAAAACCAAGTTCAACTGCTAGAGAATGACaatgttaatgttaatggaTTGGCTATTCAAATATTTGAAGAACCTGGTACTACGGATCGACAATGTAGAGCGTATATCGAAGCCAAGGGAAGGCGGTGTGCAAGAACTGCAATTAGGAATGATATATACTGTTGTGCGCATTTCTCAAGTAAAAAAGGCAAATGTGCTGACGAACGTACCCCTATTTGCGGAGGTATAACTATTGCTGGTGCTAGATGTAAGCACCGTTCCCTTCCTGGCCGTGCATTCTGCAAGAAACATCTCCGCAATGTAACGAAGGGCCAAACGTCAAATTCAAAGTGTCGCACTcggaaaaggaaaaggaaatttGAAGAAATCTGCACTGACATGGTCTTGGCACATCAGGAAATTCCATTGGAAATTAACCCGGTGTCAGTCATCAACAGGGATGATTCTTTTGAGGCAAGGAACATCATAGGCGAAACTCTCATGCTTTCTAGTACTGGTCACAATGAAATTAAGGCGCTTCAGTGGATAGACTCTCCTGATCATACCGAAGACTCTTGTTTCGATAATGAGAATGGTAGTAAGTGTAAGATTTGCTTTGAAGAATATTCTAATGATCAAATGCTTGGCAACCATTGGATGGAAAGTCATACAAGAGAAGCAGAATGGTTATTCAGAAGCTATGCTTGTGCAATTTGCCTCGACTCCTTTGTGAACAAGAAACTATTGGAATCGCATGTTCAGCAGAGGCACCGTGTGCAGTTTTTCGAAGATTCAGTACTTTTAATATGTATACCTTGTGGTAGAGATTTTGGAAATATGGACGAGTTATGGATACATGTTATGTCGGCTCACACTGCAGAACTGAAATTGTCGAAAGCTCCTGAGCAGCTAATGTTGTCTACCGGCAATGATTCTCTTAAAATGATTGAGCAGGGAAATGAAGCTTCTTTAAACAATAATTCCATGATTCCAAGTGGTTCACAGAAGTTAGTATGCAGGTTCTGTGGTTTGAAATTCGATTTGTTTCCTGATCTCAATCGCCATCGTCAAGCTGTTCATATGGAGGACAATCTACCTAGTTGGGTCGAAGCATCAAATAGGCTCGAGAGAAGGGCTAGATCTAATTTGAATAGAAGAAGTCGTGCAAAGAAGACTGAATCTCAACCTAACAGTCTTGATATTTTATCAACGACCGCTCTTGCTGAATGCTGCCAAGACAATCTGGAGGCCTCCCTGAAAGAGAAATATGGACATTTGCCAGCAAGGCTCAATTTGAAGGCTACAAAACTTTGGATTGAATTGGCATCATGA | 1524 | 0.3898 | MEKLICMENAEDDIMQLDDESSDDSLLVMQVPAQVENQVQVLDNVNANDQVENQVQLLENENENVNVNDQIENQVQLLENDNVNVNGLAIQIFEEPGTTDRQCRAYIEAKGRRCARTAIRNDIYCCAHFSSKKGKCADERTPICGGITIAGARCKHRSLPGRAFCKKHLRNVTKGQTSNSKCRTRKRKRKFEEICTDMVLAHQEIPLEINPVSVINRDDSFEARNIIGETLMLSSTGHNEIKALQWIDSPDHTEDSCFDNENGSKCKICFEEYSNDQMLGNHWMESHTREAEWLFRSYACAICLDSFVNKKLLESHVQQRHRVQFFEDSVLLICIPCGRDFGNMDELWIHVMSAHTAELKLSKAPEQLMLSTGNDSLKMIEQGNEASLNNNSMIPSGSQKLVCRFCGLKFDLFPDLNRHRQAVHMEDNLPSWVEASNRLERRARSNLNRRSRAKKTESQPNSLDILSTTALAECCQDNLEASLKEKYGHLPARLNLKATKLWIELAS | 507 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g03343 | 507 | Coils | Coil | 41 | 88 | - | - | |
Tsu04g03343 | 507 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 | 82 | 487 | - | - | |
Tsu04g03343 | 507 | SMART | c2h2final6 | 332 | 355 | IPR013087 | - | |
Tsu04g03343 | 507 | SMART | c2h2final6 | 264 | 287 | IPR013087 | - | |
Tsu04g03343 | 507 | SMART | c2h2final6 | 401 | 424 | IPR013087 | - | |
Tsu04g03343 | 507 | SMART | c2h2final6 | 298 | 321 | IPR013087 | - | |
Tsu04g03343 | 507 | Gene3D | Classic Zinc Finger | 248 | 324 | - | - | |
Tsu04g03343 | 507 | Pfam | CCCH zinc finger in TRM13 protein | 101 | 128 | IPR021721 | GO:0008168 | |
Tsu04g03343 | 507 | Pfam | Zinc finger C2H2-type, 3 repeats | 300 | 425 | IPR040689 | - | |
Tsu04g03343 | 507 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 266 | 287 | IPR013087 | - | |
Tsu04g03343 | 507 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 334 | 355 | IPR013087 | - | |
Tsu04g03343 | 507 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 300 | 321 | IPR013087 | - | |
Tsu04g03343 | 507 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 401 | 429 | IPR013087 | - | |
Tsu04g03343 | 507 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 403 | 424 | IPR013087 | - | |
Tsu04g03343 | 507 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 332 | 360 | IPR013087 | - | |
Tsu04g03343 | 507 | PANTHER | SET DOMAIN PROTEIN | 82 | 487 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g03343 | Tsu-Chr4 | 42588505 | 42590028 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g03343 | 154 | 501 | C2H2 Transcription Factor Family | AT2G23740 | 28.507 | 2.83e-42 | 160 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Tsu04g03343 | zf-C2H2_3rep | 2e-51 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g03343 | - | - | mtr:MTR_8g078490 | 459.529 |