Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03343 ATGGAAAAACTGATTTGTATGGAAAATGCTGAAGATGATATAATGCAACTTGACGATGAATCTAGTGACGATTCATTACTTGTAATGCAAGTACCAGCTCAGGTAGAAAATCAAGTTCAAGTGCTTGATAATGTCAATGCTAATGATCAGGTAGAAAACCAAGTTCAACTGCTAgagaatgagaatgagaatgtTAATGTTAATGATCAGATAGAAAACCAAGTTCAACTGCTAGAGAATGACaatgttaatgttaatggaTTGGCTATTCAAATATTTGAAGAACCTGGTACTACGGATCGACAATGTAGAGCGTATATCGAAGCCAAGGGAAGGCGGTGTGCAAGAACTGCAATTAGGAATGATATATACTGTTGTGCGCATTTCTCAAGTAAAAAAGGCAAATGTGCTGACGAACGTACCCCTATTTGCGGAGGTATAACTATTGCTGGTGCTAGATGTAAGCACCGTTCCCTTCCTGGCCGTGCATTCTGCAAGAAACATCTCCGCAATGTAACGAAGGGCCAAACGTCAAATTCAAAGTGTCGCACTcggaaaaggaaaaggaaatttGAAGAAATCTGCACTGACATGGTCTTGGCACATCAGGAAATTCCATTGGAAATTAACCCGGTGTCAGTCATCAACAGGGATGATTCTTTTGAGGCAAGGAACATCATAGGCGAAACTCTCATGCTTTCTAGTACTGGTCACAATGAAATTAAGGCGCTTCAGTGGATAGACTCTCCTGATCATACCGAAGACTCTTGTTTCGATAATGAGAATGGTAGTAAGTGTAAGATTTGCTTTGAAGAATATTCTAATGATCAAATGCTTGGCAACCATTGGATGGAAAGTCATACAAGAGAAGCAGAATGGTTATTCAGAAGCTATGCTTGTGCAATTTGCCTCGACTCCTTTGTGAACAAGAAACTATTGGAATCGCATGTTCAGCAGAGGCACCGTGTGCAGTTTTTCGAAGATTCAGTACTTTTAATATGTATACCTTGTGGTAGAGATTTTGGAAATATGGACGAGTTATGGATACATGTTATGTCGGCTCACACTGCAGAACTGAAATTGTCGAAAGCTCCTGAGCAGCTAATGTTGTCTACCGGCAATGATTCTCTTAAAATGATTGAGCAGGGAAATGAAGCTTCTTTAAACAATAATTCCATGATTCCAAGTGGTTCACAGAAGTTAGTATGCAGGTTCTGTGGTTTGAAATTCGATTTGTTTCCTGATCTCAATCGCCATCGTCAAGCTGTTCATATGGAGGACAATCTACCTAGTTGGGTCGAAGCATCAAATAGGCTCGAGAGAAGGGCTAGATCTAATTTGAATAGAAGAAGTCGTGCAAAGAAGACTGAATCTCAACCTAACAGTCTTGATATTTTATCAACGACCGCTCTTGCTGAATGCTGCCAAGACAATCTGGAGGCCTCCCTGAAAGAGAAATATGGACATTTGCCAGCAAGGCTCAATTTGAAGGCTACAAAACTTTGGATTGAATTGGCATCATGA 1524 0.3898 MEKLICMENAEDDIMQLDDESSDDSLLVMQVPAQVENQVQVLDNVNANDQVENQVQLLENENENVNVNDQIENQVQLLENDNVNVNGLAIQIFEEPGTTDRQCRAYIEAKGRRCARTAIRNDIYCCAHFSSKKGKCADERTPICGGITIAGARCKHRSLPGRAFCKKHLRNVTKGQTSNSKCRTRKRKRKFEEICTDMVLAHQEIPLEINPVSVINRDDSFEARNIIGETLMLSSTGHNEIKALQWIDSPDHTEDSCFDNENGSKCKICFEEYSNDQMLGNHWMESHTREAEWLFRSYACAICLDSFVNKKLLESHVQQRHRVQFFEDSVLLICIPCGRDFGNMDELWIHVMSAHTAELKLSKAPEQLMLSTGNDSLKMIEQGNEASLNNNSMIPSGSQKLVCRFCGLKFDLFPDLNRHRQAVHMEDNLPSWVEASNRLERRARSNLNRRSRAKKTESQPNSLDILSTTALAECCQDNLEASLKEKYGHLPARLNLKATKLWIELAS 507
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03343 507 Coils Coil 41 88 - -
Tsu04g03343 507 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 82 487 - -
Tsu04g03343 507 SMART c2h2final6 332 355 IPR013087 -
Tsu04g03343 507 SMART c2h2final6 264 287 IPR013087 -
Tsu04g03343 507 SMART c2h2final6 401 424 IPR013087 -
Tsu04g03343 507 SMART c2h2final6 298 321 IPR013087 -
Tsu04g03343 507 Gene3D Classic Zinc Finger 248 324 - -
Tsu04g03343 507 Pfam CCCH zinc finger in TRM13 protein 101 128 IPR021721 GO:0008168
Tsu04g03343 507 Pfam Zinc finger C2H2-type, 3 repeats 300 425 IPR040689 -
Tsu04g03343 507 ProSitePatterns Zinc finger C2H2 type domain signature. 266 287 IPR013087 -
Tsu04g03343 507 ProSitePatterns Zinc finger C2H2 type domain signature. 334 355 IPR013087 -
Tsu04g03343 507 ProSitePatterns Zinc finger C2H2 type domain signature. 300 321 IPR013087 -
Tsu04g03343 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 401 429 IPR013087 -
Tsu04g03343 507 ProSitePatterns Zinc finger C2H2 type domain signature. 403 424 IPR013087 -
Tsu04g03343 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 332 360 IPR013087 -
Tsu04g03343 507 PANTHER SET DOMAIN PROTEIN 82 487 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu04g03343 Tsu-Chr4 42588505 42590028 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03343 154 501 C2H2 Transcription Factor Family AT2G23740 28.507 2.83e-42 160
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu04g03343 zf-C2H2_3rep 2e-51 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03343 - - mtr:MTR_8g078490 459.529