Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03341 ATGGAAAGACTAATTTGCATGGAAAGTTCTGAATATGATATAATGAAACTTGATGATGAATCTAGTGACGATTCATTACTTGTAATGCAAGTACCAGCTCAGGTAGAAAATCAAGTTCAAGTGCAAGATAATGTCATTGCTAATGATCAGGTAGAAAACCAAGTTGAACCGCAAGGGAATGTCGATGCTAATGATCCGGTAGAAAACGAAGTTCAACCGCAAGAGAATGAGaatgttaatgttaatgttaatggaTTAGCAGAAGAGGATATGGGTTTAACTACTAACCAATATTTTCATGGTGAACCATcaagaaacaacaacaaagaagaATTAGCATTGTCATTTTATGAATGGTTGGAGGTGGATGAGCCTATGGCTGTGTGGTTCAAGCTTGAGTGTGAAGAGAAGTGGCATGCAGGCATCAAATGTGCAAGGGCTGATTGGCCACTATCAATTATAAGAGGCAAACCAACTAATGATaatgagaaaaacaaatttgtcattttttctccaaaaactaaaaagtattTCTGGGTTGATATGCTTCTTGTTCAATCAATTCATGAGTTTCCTCAACCTATAGCATATGAAACTCATCAAGATGGATTAGAATTTTTACAAGATTTCACTATTGCGCGACAATTTATACTGCAAAAGCTTGCCGGTGACATGCTTCATCTTGTGCATTTAATTCATTACAATgCTTTGATAGAATCTGCTCAAAATGTGATTGTTTGGAAGCAGTTTGGTATGGAAGCATATAAGTGTTACACTTATTCAGAACTTGGAAGAATGGTTAAGAAGCTGCAAAATAATATAGTGCAGCAATATATAAAGGCTAATTGGAAACTGCATTCCTATGAGTCTTGGGCTGCAAGATGCAAGAATGCAAATAGTGCAGAGACAATAGAGCTGCTTCAGGAgGAATTGTACCGTTCGATTTTATGGAAAGATGTCAGAGCTCTCTGGAATGCATCTGTGCAACCAAAATTGGGTTATGAGTGGGAAACATGGAAGCATGATGTAATGAAATGTTTTGCTACATTTCCTTCATTTTGTAGCAACAATGGCACACAACAACAACATGCTTCGAGGTCTGATAGTTTGCGACAAGTAAGCCTTAAGTTTAGCTCAAAAAGGCCTAACCTTGTTAACCATTGGATGGAGAATCATACAAAAGAAGCACAACGGTTATTTAGTTGTGCTCTTTGTTTCGATACCTTTAGCAACAAGAAACCACTGGAAATGCATGTTCAGGAGAGACACCATGTGCAATTTGATGAACGCTTTTTACTTTTACTATGTATCTCTTGTGGTAGATATTTTGGTAACAGTCAGGAATTATGGTTACATTTCATGTCGGCTCACCCTGCCGAATTTAAAATGTCATGTGTTTAA 1401 0.3519 MERLICMESSEYDIMKLDDESSDDSLLVMQVPAQVENQVQVQDNVIANDQVENQVEPQGNVDANDPVENEVQPQENENVNVNVNGLAEEDMGLTTNQYFHGEPSRNNNKEELALSFYEWLEVDEPMAVWFKLECEEKWHAGIKCARADWPLSIIRGKPTNDNEKNKFVIFSPKTKKYFWVDMLLVQSIHEFPQPIAYETHQDGLEFLQDFTIARQFILQKLAGDMLHLVHLIHYNALIESAQNVIVWKQFGMEAYKCYTYSELGRMVKKLQNNIVQQYIKANWKLHSYESWAARCKNANSAETIELLQEELYRSILWKDVRALWNASVQPKLGYEWETWKHDVMKCFATFPSFCSNNGTQQQHASRSDSLRQVSLKFSSKRPNLVNHWMENHTKEAQRLFSCALCFDTFSNKKPLEMHVQERHHVQFDERFLLLLCISCGRYFGNSQELWLHFMSAHPAEFKMSCV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03341 466 Gene3D Classic Zinc Finger 376 464 - -
Tsu04g03341 466 PANTHER SET DOMAIN PROTEIN 96 384 - -
Tsu04g03341 466 PANTHER SET DOMAIN PROTEIN 384 464 - -
Tsu04g03341 466 Pfam Zinc finger C2H2-type, 3 repeats 402 464 IPR040689 -
Tsu04g03341 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 434 462 IPR013087 -
Tsu04g03341 466 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 96 384 - -
Tsu04g03341 466 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 384 464 - -
Tsu04g03341 466 SMART c2h2final6 400 423 IPR013087 -
Tsu04g03341 466 SMART c2h2final6 434 457 IPR013087 -
Tsu04g03341 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 400 423 IPR013087 -
Tsu04g03341 466 ProSitePatterns Zinc finger C2H2 type domain signature. 436 457 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03341 Tsu-Chr4 42576861 42579089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03341 400 462 C2H2 Transcription Factor Family AT2G23740 52.381 1.32e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03341 - - mtr:MTR_4g132610 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03341 04 42576861 42579089 Tsu04g03341 04 42576861 42579089 ECH