Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03330 ATGTTCTATCATCACAAGTCAAATCTTTCTATCGTCATCATCGTCACAATCTTTGTTACAGTAATAACCGCCGATCAAAACAAACATAACTGCAATCGAAATCGAAGATGCGGTGAACAAATTGTAAATTATCCGTTCGGATTCTCTGATGATTGCGAAATCAAACTAAACTGTATAAAAAAAGAACTCAAAATTGGTGAGTTAAAAGTTCAAGAAGTCAATTCTGATAGCATATTCATATCTTTACCAGCAAAATGCAACCGGAGCATAAGTTTCATAGAGCCACTTTTCGGAAAAAATTTCGCTCCAACATGGAACAATACGTTTCTTGTACAGCAATGTAATTCAAATCTCAGTGGTTGTGTTATTCCACCTTCGAGTTTCATTGGAACAAATATAGATGTTGATGGTTGTGATGGAAAAAGAAGAAGTGATAACATCGCTTGTTTTACGCAATTGCAGCGAAAAACAAGCGAGGATGTTCTTACTGCTGGTGATTGGAGTAGAACTGGATGCAAATTCTTGTTTTCTGCAATTGCTGTTGATAGCAGTAAAATCAAAGATGTACCTATTCAGTTTCAGGTGGTTGAATTGGGGTGGTGGCTTGAAGGGACTTGTCGTGGTGGATGTTCTGATGATGCTAATTGTACGAAGGTTCATTTTGACGGAGATAAACAGGGTTTCCGGTGTCGTTGCCGTGAAGGTTTCGTCGGAGATGGATTTGTCAACGGTACTGGTTGCCGGAGAGTTTCTCGTTGCAGACCTTCAACATTTGGGTCTAGCAAATGTGGAAAAGGACTCAGAATTGGTGTACTTATTGGAGTGATCCTAGTTGGAGCCTCCGTGACAGCTACCCTGGCTACACTATGCTACTTCGCCAAGCGCCGTTCCACGTGGCTGACAAAACAGTTAACGGTAAAGCGCCTATTAAGAGAAGCTGCAGGCAACTACATTGTTCCTCTCTACCCTTacaaagaaatagaaaaagcTACAAATTTTTTCTCAGAGAAACACAGGCTAGGAACCGGTGCTTACGGCACGGTTTATGCAGGAAACCTTCACAATGATGAATTGGTTGCTATAAAAAAGATCAGGTATAGAGACACCAACAGTGTTGACCAAGTCATGAATGAGATCAAGCTTCTTTCTTCGGTTAGTCACCCGAATTTAGTTCGACTCTTAGGCTGCTGCATAGAAAAAGGAGAGCATATACTTGTTTATGAGTATATGGCAAATGGAACATTATCTCAACATTTACAAAGAGAAAGAGGTGGAACACTTCCTTGGACAATAAGACTCACCATTGCCTCCGAAACTGCTAATGCTATAGCATTTCTCCACTCTTCAAATCCTCCAATTTATCATAGAGACATAAAATCTAGTAACATACTTTTGGACTTTAGCTTTCAATCAAAAGTAGCGGATTTCGGACTTTCTAGGCTAGGCATGACAGAAACATCACATATCTCGACTGCGCCACAAGGGACGCCGGGTTATGTTGATCCACAATATCACCAAAACTTTCACCTTTCTGATAAAAGTGATGTATATAGTTTCGGAGTTGTTTTGGTAGAGATAATAACGGCAATGAAAGTGGTTGATTTTGGTAGACCTCAGAGTGAGATTAATTTAGCAGCACTCGCTGTTGAAAAAATTAGGAAAGGTCGTATCGACGATATCATAGATCCTTTCCTTGATCTAAATAGAGATGCTTGGACACTCTATTCTGTTAACAAGGTAGCTGAGCTTGCATTTAGATGCCTCGCTTTTCATAGTGAAGCGAGGCCTAGTATGATTGAAGTTGCCGAGGAGCTAGATCATATCAGACGTAGTGGATGGGCGACAATGGAGGAAACTATATGCATGGGCTCATCGGTTGGATCTGCTTGTTCATCGCCTCGTAATAATGGAAATGAGAGTTTAGTTTCGAAGAATGAGATATCGATTGTTCCGCAAAAGACAAATAGTTTTTTGCATCCAATAGAGGAGGTGAAGGATGGTTCCCCTGTATCTATACATGGTACATGGTCAAGTAGACCAAGCTCACCTTCAACAAACAGCTTATTGGGAAATGTTGTTCAGTGA 2085 0.4019 MFYHHKSNLSIVIIVTIFVTVITADQNKHNCNRNRRCGEQIVNYPFGFSDDCEIKLNCIKKELKIGELKVQEVNSDSIFISLPAKCNRSISFIEPLFGKNFAPTWNNTFLVQQCNSNLSGCVIPPSSFIGTNIDVDGCDGKRRSDNIACFTQLQRKTSEDVLTAGDWSRTGCKFLFSAIAVDSSKIKDVPIQFQVVELGWWLEGTCRGGCSDDANCTKVHFDGDKQGFRCRCREGFVGDGFVNGTGCRRVSRCRPSTFGSSKCGKGLRIGVLIGVILVGASVTATLATLCYFAKRRSTWLTKQLTVKRLLREAAGNYIVPLYPYKEIEKATNFFSEKHRLGTGAYGTVYAGNLHNDELVAIKKIRYRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEKGEHILVYEYMANGTLSQHLQRERGGTLPWTIRLTIASETANAIAFLHSSNPPIYHRDIKSSNILLDFSFQSKVADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFGRPQSEINLAALAVEKIRKGRIDDIIDPFLDLNRDAWTLYSVNKVAELAFRCLAFHSEARPSMIEVAEELDHIRRSGWATMEETICMGSSVGSACSSPRNNGNESLVSKNEISIVPQKTNSFLHPIEEVKDGSPVSIHGTWSSRPSSPSTNSLLGNVVQ 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03330 694 CDD STKc_IRAK 340 608 - -
Tsu04g03330 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Tsu04g03330 694 Gene3D Laminin 209 243 - -
Tsu04g03330 694 SUPERFAMILY Protein kinase-like (PK-like) 316 605 IPR011009 -
Tsu04g03330 694 SMART serkin_6 334 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03330 694 Gene3D Transferase(Phosphotransferase) domain 1 410 622 - -
Tsu04g03330 694 MobiDBLite consensus disorder prediction 672 694 - -
Tsu04g03330 694 Gene3D Phosphorylase Kinase; domain 1 296 409 - -
Tsu04g03330 694 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Tsu04g03330 694 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 645 IPR045274 GO:0007166
Tsu04g03330 694 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 18 645 - -
Tsu04g03330 694 Pfam Protein kinase domain 335 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03330 694 ProSiteProfiles Protein kinase domain profile. 334 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03330 Tsu-Chr4 42410347 42415373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03330 5 692 Receptor kinase-like Gene Family AT2G23450 53.857 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu04g03330 Pkinase 5.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03330 - - lja:Lj4g3v0867570.1 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00674 05 5639475 5643817 Tsu04g03330 04 42410347 42415373 PCT