Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03321 ATGACATCTTCCGACTCCGGTGAGAGCCGCCGATCAACCAAACCACAAAACCGACCCGGACCACTTGCACCTGAGCAAGAGAATCTCCCATGTCCTCGTTGTGATTCAACCAACACTAAGTTCTGTTACTACAACAACTATAACTATTCTCAGCCACGCCATTTCTGTAAGGGTTGTCGCCGGTACTGGACTCAAGGAGGTACTCTCCGTGACATCCCAGTCGGCGGAGGTACCCGCAAAAACGCCAAGCGCTCCCGAACTCAGCACATTGAAGTGACATCTTCTTCTCCCTCCCATGTGACTTCTGCACCGGAGCACTACCACTATCAATCAATGACACCTACCTCTGCGGTACAAGGAGGTTCTTTTCCGTACGGTGAAAGTGTTGATGGTGACGGAAAACAGAATATGAGTGTTTCTGGGAGCTTCACTTCATTGCTGAACAACAATAACAATCAAGGGGGTTCTGGCTTTCTTGCTTTAGGTGGATTTGGGTTTGGGCTTGGACAAGGGCTTGAAGAAATGGGCTTTGGAATTGGAAGAACTGGTTGGGGTTTTCCAGGAATGGTGGATGGATCAAACATTGGTGGTGTGCCAGTTATGTCTTCAAACGCATGGCAGTTAGATGGTGGTGATGGTGGTTTTGTTGGTGGTGACTGTTTCTCTTGGCCTGGACTTGCAATTTCAACAACCGGAAATGGTCTCAAATGA 711 0.4852 MTSSDSGESRRSTKPQNRPGPLAPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKGCRRYWTQGGTLRDIPVGGGTRKNAKRSRTQHIEVTSSSPSHVTSAPEHYHYQSMTPTSAVQGGSFPYGESVDGDGKQNMSVSGSFTSLLNNNNNQGGSGFLALGGFGFGLGQGLEEMGFGIGRTGWGFPGMVDGSNIGGVPVMSSNAWQLDGGDGGFVGGDCFSWPGLAISTTGNGLK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03321 236 MobiDBLite consensus disorder prediction 1 30 - -
Tsu04g03321 236 MobiDBLite consensus disorder prediction 88 103 - -
Tsu04g03321 236 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
Tsu04g03321 236 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Tsu04g03321 236 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 2 233 - -
Tsu04g03321 236 MobiDBLite consensus disorder prediction 1 16 - -
Tsu04g03321 236 MobiDBLite consensus disorder prediction 74 103 - -
Tsu04g03321 236 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Tsu04g03321 236 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 233 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03321 Tsu-Chr4 42309485 42310195 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03321 1 236 C2C2-Dof Transcription Factor Family AT3G50410 47.266 7.93e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu04g03321 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03321 - - cam:101488684 337.035