Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03314 ATGATCCAAGAACTCTTTGGTAATGGTGCTAGTGCTTCCCTCATAGCAAATGAAAGAAACTACTCTTCCATTAATGGAGGAGGAGTTGGAGGAGTTTTACTTCAACAAACTACTCaatctccttcttcttctccatGTCCATCTTCCACAACCACCACCACTACAACCACCACaccaaccaccaccaccacaacatCAGAAAACCAACAACATCTGAGGTGTCCAAGATGTGATTCATCAAACACAAAGTTTTGTTACTACAACAACTATAACCTCACTCAGCCGCGTCATTTCTGCAAGACATGCCGCCGTTACTGGACAAAAGGCGGGGCTTTACGCAACGTCCCCATCGGAGGCGGCTGCCGGAAAAACAAAAGTATCGGCATGTCGAATACCGCGGCTAAAACAACCACAAACAAGATGAAAACAGTGGCTTCGGAGTTTATCCGGTCAGCAAGTAGTCAGGAGTTCGATCAGATTATGACACCACCAAGTCAAATCCTTTGGGGTTCTCCTCAAAATTCTCATCTACTTTCTTTGCTAAGATCTAGTCAAAACCAAAGCCCTAACCCTAATCATGTTAAGGAAGAAGGAAATAATAACTTATTAGGGTCCCATATTTCTCACATGATGAGTTCTCAACCGTTGATTTCATCAAATGTTTATGATGGTGTTGGACATGTTTTATGCAACCCATTTTGGAGAAACAATCATGATAATCAAACTCAACAACTACAAAATAATGGTGGATTTGTACTTGGAGAACAACAACATCAGCATCATCAAACTAGTGGAATCCAAGAACTTTACCAGAAGCTAAGgtcatcaacaacatcatcatcaggTAATAATTATTGTAGTGAGATTGCAGCTTCACCAACAGTGTTACTAGGGAACGTGGCTTCAAATCCATCTTCTATATCAAATATTTTGGAGACAACTTCAGTTACTGGTGGTGGTGAATTAGGGTATTGGAATCCAATTCCAACTCTTACTTGGTCTGATAATCTTCCAACTACCAATGGTGCATATCCATGA 1038 0.3815 MIQELFGNGASASLIANERNYSSINGGGVGGVLLQQTTQSPSSSPCPSSTTTTTTTTTPTTTTTTSENQQHLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSIGMSNTAAKTTTNKMKTVASEFIRSASSQEFDQIMTPPSQILWGSPQNSHLLSLLRSSQNQSPNPNHVKEEGNNNLLGSHISHMMSSQPLISSNVYDGVGHVLCNPFWRNNHDNQTQQLQNNGGFVLGEQQHQHHQTSGIQELYQKLRSSTTSSSGNNYCSEIAASPTVLLGNVASNPSSISNILETTSVTGGGELGYWNPIPTLTWSDNLPTTNGAYP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03314 345 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Tsu04g03314 345 Pfam Dof domain, zinc finger 70 126 IPR003851 GO:0003677|GO:0006355
Tsu04g03314 345 MobiDBLite consensus disorder prediction 32 70 - -
Tsu04g03314 345 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 343 IPR045174 GO:0003700|GO:0006355
Tsu04g03314 345 MobiDBLite consensus disorder prediction 183 206 - -
Tsu04g03314 345 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Tsu04g03314 345 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 14 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03314 Tsu-Chr4 42231924 42233355 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03314 40 136 C2C2-Dof Transcription Factor Family AT5G65590 57.732 7.18e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu04g03314 zf-Dof 9.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03314 - - gmx:778100 335.88