Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03309 ATGGACAAAACAATGGTGCATAATATCTTAATGCCATTTCTTTGGTTCTTATTATTATGCTCCTACATGATAGGAACTTCCACTTCATTACACATTTTAGCAGTGAACCAAACGATCCGAGATGGTGGTGGTGAGAGTTTAGTTTCAGAAGGTGGGATCATTGAATTGGGTTTCTTCAGCCCTGGGAGTTCAAAAGGTCGATACTTGGGTGTATGGTACAGGAATGTAACCCCTTTAACAGTGATATGGGTTGCCAATAGAGAAACACCTCTACAAAAACATTCTGGAGTGTTAAAGCTCAATGCAAACGGGATTTTTCAGCTTCGCAATGGCCCTGCTAACAACGCTATAATTTGGTCCTCCAATACAACAAGCAAAACAGGGAATCTGAATAATCCTATGGCTCAGCTCCTGGATTCAGGAAATTTGGTAGTGAAAAATGGACAGCAAACTACTGATGACTTTTTGTGGCAGAGTTTTGATTATCCCTCGGATACATTGATGCCGGGAATGAAACTTGGATGGAACTTGGAAACTGGTCTAGAAAGATTCATATCATCATGGAAAAATGCTGATGACCCTGCTAAGGGAGAATATGCTACCAAACTTGACCTTAGAGGATATCCCCAGATAATTACATTCAAAGGTTCTGATATAGTTACTAGAGTAGGACCATGGCTCGGCGAGTTCATTGCTGGATCTCAAGAACCAAGCCCGGGAGCGGTACAGAGATTTGTGTTCAATGAAAAAGAAGTGTATTATGATTATGAGCTTTCTGTCAACACAACTACTTCCATATCTAAACTGGCTCCTTCAGGTGCTAGTGAGATTCTGTTTTGGACAGCTGTACCGAGCACACAGCAAGTGTACTCAAATGGGGAACTAGATCAATGCGAACACTACGCCTATTGCGGAGTGAATTCTATATGCAGCATTGACGGTAGCATTCCAACTTGTGAGTGCTTGAAAGGGTATGTTCCCAAGTTTCCTCAACAATGGATAGTGTATAACTGGCAAAACGGTTGTGTTCCGAGGAATGAATCTAATTGCAAAAACAGTACTACGCACAAAACAGATCAGGGATTCTTGAAGTACATACAAACCAAGTATCCAGATACGTCTTCATCTTGGTTTAATAAGACCATGAACCTTGAGGAATGTAAGGTGTCGTGTCTGAGAAACTGTTCCTGTGTAGCCTGTGCTAATTTAGATACCCGCAATGGGGGAACTGGGTGTCTTCTTTGGTTTCATAATGTGGTTGATGTGAGGAAATTCTATCAATGGGGACAAGATTTTTATGTCAAAGTCCCTCTTTCAGAACTAGATCAAATCGCAGCAGCCGATGATGGCCATGGAAAGATCAAGAAGATAGTAGGAATAACAGTTGGTGTGATTATTTTTGGATTAATGACATGTGGATCAATactgataattaaaaataaagGGACTTCAAGAAATACTTTCATCAAGCATTACAAAAAGAACCTAAGGAGGGAAGATGTTGACTTACCAACATTCGATTTCTCAGTCTTAGCTTATGCCACTAACAACTTTTCAAGCAGTAACAAACTCGGAGAAGGTGGCTTTGGACCAGTATACAGGggaATGTTGATAGATGGACAAGAGATAGCTGTGAAAAGACTTTCAAAAAGGTCTGGACAAGGGTTGgaagaatttaaaaatgaagtGGCGCTGATTGCCAAACTTCAGCACCGTAATCTCATAAAGCTTCTTGGTTGTTGTATTCAAGGAGAAGAAACAATGCTGGTTTATGAATACATGGCCAACAAAAGCTTGGACTACTTTGTTTTTGATGAAACCAAAAGGATGTCACTGGATTGGCTCAAGCGTTACAATATTATTGGTAGCATTGCTCGAGGACTTCTTTATCTTCATCAAGACTCAAGACTGAGGATCATTCACAGAGATCTAAAAACTAGCAATATATTACTAGATGCAAATTTGGAGCCGAAGATATCAGACTTTGGCTTGGCTCGAATATTTTTGGGAGACCAAATCGAGGCAAACACAAATAGAGTGGCTGGAACTTAG 2052 0.3981 MDKTMVHNILMPFLWFLLLCSYMIGTSTSLHILAVNQTIRDGGGESLVSEGGIIELGFFSPGSSKGRYLGVWYRNVTPLTVIWVANRETPLQKHSGVLKLNANGIFQLRNGPANNAIIWSSNTTSKTGNLNNPMAQLLDSGNLVVKNGQQTTDDFLWQSFDYPSDTLMPGMKLGWNLETGLERFISSWKNADDPAKGEYATKLDLRGYPQIITFKGSDIVTRVGPWLGEFIAGSQEPSPGAVQRFVFNEKEVYYDYELSVNTTTSISKLAPSGASEILFWTAVPSTQQVYSNGELDQCEHYAYCGVNSICSIDGSIPTCECLKGYVPKFPQQWIVYNWQNGCVPRNESNCKNSTTHKTDQGFLKYIQTKYPDTSSSWFNKTMNLEECKVSCLRNCSCVACANLDTRNGGTGCLLWFHNVVDVRKFYQWGQDFYVKVPLSELDQIAAADDGHGKIKKIVGITVGVIIFGLMTCGSILIIKNKGTSRNTFIKHYKKNLRREDVDLPTFDFSVLAYATNNFSSSNKLGEGGFGPVYRGMLIDGQEIAVKRLSKRSGQGLEEFKNEVALIAKLQHRNLIKLLGCCIQGEETMLVYEYMANKSLDYFVFDETKRMSLDWLKRYNIIGSIARGLLYLHQDSRLRIIHRDLKTSNILLDANLEPKISDFGLARIFLGDQIEANTNRVAGT 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03309 683 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 21 683 - -
Tsu04g03309 683 Pfam Protein kinase domain 519 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03309 683 Pfam S-locus glycoprotein domain 222 329 IPR000858 GO:0048544
Tsu04g03309 683 SMART ntp_6 357 436 IPR003609 -
Tsu04g03309 683 Gene3D - 28 160 IPR036426 -
Tsu04g03309 683 Gene3D Phosphorylase Kinase; domain 1 491 593 - -
Tsu04g03309 683 ProSiteProfiles EGF-like domain profile. 294 331 IPR000742 -
Tsu04g03309 683 Gene3D Transferase(Phosphotransferase) domain 1 594 683 - -
Tsu04g03309 683 CDD B_lectin 42 163 IPR001480 -
Tsu04g03309 683 SMART blect_4 38 163 IPR001480 -
Tsu04g03309 683 Pfam D-mannose binding lectin 80 189 IPR001480 -
Tsu04g03309 683 SMART serkin_6 518 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03309 683 CDD PAN_AP_plant 348 437 - -
Tsu04g03309 683 ProSiteProfiles Bulb-type lectin domain profile. 32 158 IPR001480 -
Tsu04g03309 683 ProSiteProfiles Protein kinase domain profile. 518 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03309 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Tsu04g03309 683 Gene3D Hepatocyte Growth Factor 352 434 - -
Tsu04g03309 683 SUPERFAMILY Protein kinase-like (PK-like) 503 683 IPR011009 -
Tsu04g03309 683 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 683 - -
Tsu04g03309 683 ProSiteProfiles PAN/Apple domain profile. 350 437 IPR003609 -
Tsu04g03309 683 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 194 IPR036426 -
Tsu04g03309 683 Pfam PAN-like domain 357 422 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03309 Tsu-Chr4 42192377 42195850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03309 459 683 Receptor kinase-like Gene Family AT4G23190 56.277 8.57e-80 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu04g03309 Pkinase 1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03309 - - gmx:100815430 889.797