Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03305 ATGGCTATGATTCTAGATGCTGTTGTTGGGAAATTAGTAGATGAACTATTGAGTTCAGTAGTTGAAATGAAAGATAGAGCTTTGAAATTCAAACCAACATTAGAACAATTAGAAACAACTCTCAAATCATTAGCACCATTGATCAAACAAATAGATGAATATAACAAGAGACTCGATCGATCGGCTAAAGAAACCGAGAGAATAATCAAGCAAATGAAAGATGGAAAAGAACTTGTTCTTAAATGTTCTGATAAAGAACAAATCAAGTGGTGGAACTGTTGTTATAAAAAAGCAGAATATCAAGAGAAACTTGAAGGATTAGATGGTGAGATTAGGAGATTCTTTGAGCTTGATATGAGAGCTCAAGATATGAGAAATGGGTTGGAAGCACTTGTGGAAATTAAGGAGTTTAGAGCTGAATTTAGAAGTGTTGGTTTGAGGAATGAGAGGAGGATTGAATTAAGGGGTGTTTGTTTGCCACCTCAACCACCTGGTTTTACTGTTGGATTAGATGGTCCTTTGAATGAGTTGAAGATGAGATTGTTGAAGGATGAGGTTAGTGTTTCTGTTGTTACTGTTACTGGTTCTGGTGGTTCGGGGAAATCGACGTTGGCTAAAAGGTTTTGTTGGGATGAACAAGTAAAAGGTAAATTCAAGGAAAATATCTTCTTCATTACCTTTGCAAAATCACCAAAGCTGAATGCTATAGTGCAGAAAATCTATCAACACACTGGTTACCAAGTTCCGGAGTTTCAAAGCGATGAAGACACGTTTAACCAATTGGAATATTTGATGAAACAAATTGTGCAAAAGGGCCCAATATTGTTGGTCTTAGACGATGTTTGGCTAGAATCAGTATCACTTGTTGACAATTTTGTGTTTGAGATTCCAAACTACAAGATTATGGTTACATCAAGATTTGCTATTGCAAGATTTGGTCGTCCATTTGTATTGAAACCTCTTTCCGAAGCACATGCTATAAATCTATTTAAGCATTCAGCATCCTTAACTAAGACCAGCTCAGATGTTCCCGATGATGTTGTCAATAAGATAGTAAGATGTTGCAGCGGTTCTCCCTTAGCACTTCGAGTGAGTGGGAGATCATTAAGTAACGAACACCAGATAGTTTGGCTTAACCGAGCAAAAGAATTATCAGCTGGTAGTTCGATTCTTGATTCTAGCAAAGACGTGCTTTCTTGTCTCCAAAAGAGCTTAGATGTGTTGGATCCTAAGTCCATGGAATGTTTTAGGGACTTGGGCTTATTTCCTGAAGACCAAAGGATCCCTGCAGCTGCCCTTATTGATATGTGGGCAGAATTAAGGGACGACGATGATGCAACTGCAATGGAGAGAATTTATAAGCTAGTTAACCTTAACTTAGCTGATATAATTGTGACAAGGAAAGTTGCAAGTGGCGCGATTGACTACAACTATCACTATGTTACACAATATGGCCTTCTTAGGGATCTAGCCATCCGTGATACTGATCAAGAGGCAGACAATAAGAGGAATAGACTCATAATTGACACTAGTGCAAATAATCTTCCCTCATGGTGGACTTCAGAGAATGAGTATCACATTGCAGCTCGCATATTATCGATATCAACTGATGAAACATTCACTACAAAATGGTGCAACTTGCAGCCAACTGAAGTTGAGGCATTAGTGCTAAACCTTAGAGAAAAGAAGTGCACATTACCAATGTTCATGAAGAAAATGAACAAACTAAAAGTTTTGATAATCACAAACTATGACTTCTATCCAGCTGAACTAGATAATTTCGAGCTGCTCGATCATCTATCGAGTCTCAAACGAATCAGATTTGAGAAAATTTCAATTCCTTTCCTCGGAAAAACCATAGTTCAGCTGAAGAATCTTAagaacttttcattttttatgtgCAATGTGAATAAAGCATTTGAAAATTGCACTATCCAAGATTCAGAAATACTACCAAGTTTGATGGAGATGAATTTCGACTATTGTGATATGGTTAAATTACCAAATGTGATTTCCAACATTGTATCCTTAAAGAAGCTTAGTATCACAAATTGTCATAAGCTTTGTGCACTTCATGAAGGAATTGGAAATTTGGTTAATTTGGAATCACTAAGGCTAAGTTCATGCAGTGGTTTATTAGAGTTACCAAATTCAATCACAAATCTTCATAAGCTAAAGTTTCTTGACATTTCAGGATGCATAAGCCTTGGTCAATTACCTGAAAATATGTTTGAGTTGGAAAAACTAGAAAAACTCAATATGAGAGGTTGTTCAAGTATAAGTGAATTGCCATCATCAATTATGGAACTTAAGGGATTAAAACATGTGATATGTGATGAAGAGACTGCTGAAAAATGGGAACCTTTTAGAACTATTCTCGGTGATCTAAGGATAGAGGTTGTTCAAGAAGATTTCAACTTAAATTTTCTTTACAATTAA 2439 0.3612 MAMILDAVVGKLVDELLSSVVEMKDRALKFKPTLEQLETTLKSLAPLIKQIDEYNKRLDRSAKETERIIKQMKDGKELVLKCSDKEQIKWWNCCYKKAEYQEKLEGLDGEIRRFFELDMRAQDMRNGLEALVEIKEFRAEFRSVGLRNERRIELRGVCLPPQPPGFTVGLDGPLNELKMRLLKDEVSVSVVTVTGSGGSGKSTLAKRFCWDEQVKGKFKENIFFITFAKSPKLNAIVQKIYQHTGYQVPEFQSDEDTFNQLEYLMKQIVQKGPILLVLDDVWLESVSLVDNFVFEIPNYKIMVTSRFAIARFGRPFVLKPLSEAHAINLFKHSASLTKTSSDVPDDVVNKIVRCCSGSPLALRVSGRSLSNEHQIVWLNRAKELSAGSSILDSSKDVLSCLQKSLDVLDPKSMECFRDLGLFPEDQRIPAAALIDMWAELRDDDDATAMERIYKLVNLNLADIIVTRKVASGAIDYNYHYVTQYGLLRDLAIRDTDQEADNKRNRLIIDTSANNLPSWWTSENEYHIAARILSISTDETFTTKWCNLQPTEVEALVLNLREKKCTLPMFMKKMNKLKVLIITNYDFYPAELDNFELLDHLSSLKRIRFEKISIPFLGKTIVQLKNLKNFSFFMCNVNKAFENCTIQDSEILPSLMEMNFDYCDMVKLPNVISNIVSLKKLSITNCHKLCALHEGIGNLVNLESLRLSSCSGLLELPNSITNLHKLKFLDISGCISLGQLPENMFELEKLEKLNMRGCSSISELPSSIMELKGLKHVICDEETAEKWEPFRTILGDLRIEVVQEDFNLNFLYN 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03305 812 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 7 140 IPR008808 -
Tsu04g03305 812 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 1 812 IPR039203 GO:0050832
Tsu04g03305 812 Pfam NB-ARC domain 173 404 IPR002182 GO:0043531
Tsu04g03305 812 ProSiteProfiles RPW8 domain profile. 1 153 IPR008808 -
Tsu04g03305 812 Gene3D - 405 487 IPR036388 -
Tsu04g03305 812 PANTHER LRR AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 1 812 - -
Tsu04g03305 812 Gene3D Ribonuclease Inhibitor 495 793 IPR032675 -
Tsu04g03305 812 Coils Coil 51 71 - -
Tsu04g03305 812 Gene3D - 154 312 IPR027417 -
Tsu04g03305 812 Gene3D - 321 404 IPR042197 -
Tsu04g03305 812 PRINTS Disease resistance protein signature 190 205 - -
Tsu04g03305 812 PRINTS Disease resistance protein signature 268 282 - -
Tsu04g03305 812 PRINTS Disease resistance protein signature 720 736 - -
Tsu04g03305 812 PRINTS Disease resistance protein signature 355 369 - -
Tsu04g03305 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 419 IPR027417 -
Tsu04g03305 812 SUPERFAMILY RNI-like 556 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03305 Tsu-Chr4 42164379 42169371 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03305 593 770 WRKY Transcription Factor Family AT5G45050 28.729 1.84e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03305 - - mtr:MTR_8g479450 1212.21