Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03304 ATGCCAAAACGTCGTTCGGGAAAAACAGCACTAGTAAGACGCAATCTACAAAATAGGTCGTGCAAGCATCTAAGATGCAACTCATCCTGTGAATTAGCTCCATTCTTTCCATTGGACAACCCACAACGTTTCAAAGTTGTACATGAAGTGTTCGGAAGGAGCAACGTGTCCAAGATGTTGCGGGAAATAGACCCTTCACAACGTGAAAACACAGTTGATTCGTTGGTCTATGAGGTTGAGGCTTGTCTGAGGGACCCTATTAATGGCTATTTGGATTATGTTCACAATCTTGAACATCAGTCGTGA 306 0.4314 MPKRRSGKTALVRRNLQNRSCKHLRCNSSCELAPFFPLDNPQRFKVVHEVFGRSNVSKMLREIDPSQRENTVDSLVYEVEACLRDPINGYLDYVHNLEHQS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03304 101 ProSiteProfiles LOB domain profile. 14 101 IPR004883 -
Tsu04g03304 101 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 20 100 - -
Tsu04g03304 101 Pfam Lateral organ boundaries (LOB) domain 20 100 IPR004883 -
Tsu04g03304 101 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 20 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03304 Tsu-Chr4 42161141 42161446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03304 20 100 AS2 family AT3G27650 49.398 5.04e-24 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu04g03304 LOB 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03304 - - lang:109340141 101.293