Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03301 atgaACAGCGCCACACAGATCATTTCCGCTACAACAAGGTTTCATGATATCTTGAACAAGATATCGCAAATTATTGAAAAAGCTCGTAAGAACCAAAGCAAAAGGCGATTGTTGAGGTCCATTATAAAGGATTTATCTCCCGTGGTTCGAGAAATAAAGCAATACAATGAACATTTGGATCACCCAAGCGTAGAAATTAAGACACTAATAGAAGAAAATGTTGCAAAAGAAAGTGCAAGCAAATGCTCCTCCGAGAATAGTTGGTTCAACAAATGTTTCTATTGGTTCAAGAAAGATTCATATGTTGCTGATGATAATGAATCTTTTACTGTAAAGGATGTTAAAGAGACACTTTACAAGGTTAGAGAAATTCTTGAGCTTCTCaacaatgaaaattttgaaCAGAAATTCAATGAAGCTGGACCACCAATATTCAAGGGTCCTTTTGGTGTTCCTGAAAATCCAAAATTCAGTGTTGGGTTGGATATACCTTTTAGCAAGTTGAAAATGGAGCTTTTAAGGGATGACAGTTCCACCCTTGTGTTGACTGGTATGGGAGGTTTGGGAAAAACCACTCTGGCTACAAAGCTTTGTTGGGATGATCAAGTTAAGGGTAAATTCaaggaaaatattatatttgtcacCTTCTCAAAAACACCAATGTTGAAGACTATCGTAGAGAGAATATTTGAACACTGTAGATATTCAGTGCCTGAGTTTCAAAGTGATGAAGATGCAGTTAATAGATTGGGACTTTTGTTAAAGAAAGTTGAGGGAAATCCACTATTGTTGGTCCTGGATGATGTTTGGTCAAACTCGGAAAATCTTGTTGAGAAACTTCAATTCCAGAtatcatatttcaaaattctggTGACTTCAAGATTTGCATTTTCAAGACTTAGCACAACATGTATCTTACAACCTCTTGTTCATGAAGATGCTGTAAAACTTTTCTATCACTATGCTCATATGGAAAAAAATAGTTCAGATATTATCGACAAAGATCTTATCGAAAAGGTTGTAAGAAGTTGCAAAGGTTTACCGCTTACGATTAAAGTGATTGCTACATCTCTCAGAAGTCGGCCCTATGACTTGTGGCGAAAGATAGTGAAGGAACTGTCACAAGGTCATTCAATACTTGATTCTAATTCTGAATTACTTACCCGCCTCCAAAAGATCTTAGATGTTTTGGAAGATAATCGCATCAACAGGGAGTGCTTCATGGACCTAGCCTTATTTCCCGAAGACCATAGAATTCCTGTTGCTGCTCTCATTGATATGTGGACAGAGTTGTATGAACTAGATGACAATGGAATAGAAGCAATGgaaattatcaacaaattaGGATCCATGAATCTGGCTAATGTCTTAATAGCAAGGAAATCTACAAGTGACGCAGACAATTACAACTATAATAACCACTTCATCATCCTTCATGATCTTATAAGAGATCTTGGAATTTACCAAAGCATCAAAGAACCAattgagaagagaaaaagaCTGATTATTGACATGAATGAAAGCAAGCATAAACAGTGTTTTGTGGAGAAGCAGCAATGCTTCATGTCCCGTATATTGTCAAAACTTCTGACACCGTGTGTGAAACAAAATCCGCAACAGCTCGCTGCTCGTATATTGTCTGTATCAACTGATCAAACTTGTGCGGCAGATTGGTCTCAAATGCAACCAGCTCAGGCGGAGGTTCTGATTTTAAACCTTCATACAAAGCAATACTTATTTCCCGAGTCGATAGAGAAAATGAGTATGCTCAAAGTTTTGATAATCACAAACTACGCTTTTCATCCTTCTGAACTTAACAACTTTGAGCTACTTGACTCGTTACACAACCTGAAAAGAATCAGACTCGAGCGAATTTCTGTTCCTTCCTTCGGCACATTGAAGAATCTGAAAAAACTATCCTTGTACATGTGTAATACAAGGCTGGCTTTTGAAAAAGGTAGTATCCTAATTTCAGACACATTTCCAAATCTAGAAGAATTGAACATTGATTACTGCAAAGATTTATTGGTATTGCCTACTGGTATGTGTGATATCACGCCTTTAAAGAAGCTTAGCGTTACTAATTGCCACAAGCTTTCTTCACTTCCCCAAGATATTGGGAAATTGGAGAATTTGGAACTTCTAAGGCTCAGTTCGTGTACTGATTTGGAATTGATACCGAATTCCATTGGAAAGCTTTCGAATCTAACAGTTCTTGACATCTCAAACTGCATAAGCCTTTCAAGTTTACCTGACGAATTTGGTAATCTGTGCAACCTAAGGAATCTTTACATGGCAGGCTGTGCAAATTGTGAATTGCCATTCTCCGTCGTCAATCTTAAGAATTTGAAAGTGATAACGTGCGATGAAGAGACGGCTGCTTCATGGGAAGCTTTCCAACCTATGCTTCCCAATATGAAGATAGAGGTTCCTCATGTTGATGTTAACTTAAATTGGCTTCATTAA 2466 0.3642 MNSATQIISATTRFHDILNKISQIIEKARKNQSKRRLLRSIIKDLSPVVREIKQYNEHLDHPSVEIKTLIEENVAKESASKCSSENSWFNKCFYWFKKDSYVADDNESFTVKDVKETLYKVREILELLNNENFEQKFNEAGPPIFKGPFGVPENPKFSVGLDIPFSKLKMELLRDDSSTLVLTGMGGLGKTTLATKLCWDDQVKGKFKENIIFVTFSKTPMLKTIVERIFEHCRYSVPEFQSDEDAVNRLGLLLKKVEGNPLLLVLDDVWSNSENLVEKLQFQISYFKILVTSRFAFSRLSTTCILQPLVHEDAVKLFYHYAHMEKNSSDIIDKDLIEKVVRSCKGLPLTIKVIATSLRSRPYDLWRKIVKELSQGHSILDSNSELLTRLQKILDVLEDNRINRECFMDLALFPEDHRIPVAALIDMWTELYELDDNGIEAMEIINKLGSMNLANVLIARKSTSDADNYNYNNHFIILHDLIRDLGIYQSIKEPIEKRKRLIIDMNESKHKQCFVEKQQCFMSRILSKLLTPCVKQNPQQLAARILSVSTDQTCAADWSQMQPAQAEVLILNLHTKQYLFPESIEKMSMLKVLIITNYAFHPSELNNFELLDSLHNLKRIRLERISVPSFGTLKNLKKLSLYMCNTRLAFEKGSILISDTFPNLEELNIDYCKDLLVLPTGMCDITPLKKLSVTNCHKLSSLPQDIGKLENLELLRLSSCTDLELIPNSIGKLSNLTVLDISNCISLSSLPDEFGNLCNLRNLYMAGCANCELPFSVVNLKNLKVITCDEETAASWEAFQPMLPNMKIEVPHVDVNLNWLH 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03301 821 Pfam NB-ARC domain 167 393 IPR002182 GO:0043531
Tsu04g03301 821 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 11 811 IPR039203 GO:0050832
Tsu04g03301 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 410 IPR027417 -
Tsu04g03301 821 Gene3D Ribonuclease Inhibitor 533 804 IPR032675 -
Tsu04g03301 821 Gene3D - 392 487 IPR036388 -
Tsu04g03301 821 SUPERFAMILY L domain-like 479 788 - -
Tsu04g03301 821 Gene3D - 147 302 IPR027417 -
Tsu04g03301 821 CDD AAA 172 294 - -
Tsu04g03301 821 PRINTS Disease resistance protein signature 179 194 - -
Tsu04g03301 821 PRINTS Disease resistance protein signature 256 270 - -
Tsu04g03301 821 PRINTS Disease resistance protein signature 344 358 - -
Tsu04g03301 821 PRINTS Disease resistance protein signature 731 747 - -
Tsu04g03301 821 Gene3D - 309 391 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03301 Tsu-Chr4 42106027 42111431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03301 184 778 WRKY Transcription Factor Family AT5G45050 23.732 2.41e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03301 - - gmx:112997603 1001.5