Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03300 ATGAACAGCACCACACAACTTATTGCCTCAACAACACCATTTCATGATGTGTTGAACACGATATCGCAAATTGTTGAAAAAGCTCGTAACGATCGAAATACAAGGCGATTGTTGAAGTCGGTTTTAAAGGAATTAACACCGGTGGTCCGAGATATACAGCAATATAATGAACATTTGGATCATCCCAGAGAGGAAATTAAGACTCTAATAGAACAAAATTATGCAACAGAAACTGCATGCAATGATTCATATGTAGTTGCAGATGATAAAGAATCTATTACTGTAAAGGAAGTTAAAGAGACACTTTATAAGGTCAGAGAAATCCTTGAGCTACTCAGCAATGAGAATTTTGAACAGAAATTCAATGAAGCTGGATCACCAATATTCAAGGGTCCTTTTGGTGTTCCTGAAAAtccaaaattcattgttgggTTGGATATACCTTTCAGCAAATTGAAAATGGAGCTTTTAAGGGATGGTAGTTCTACCCTTGTGTTGACTGGTTTGGGAGGTTTGGGAAAAACTACTTTGGCTACAAAGATTTGTTGGGATGAACATGTTAAGGGCAAATTCAAgggaaatattatatttgtcacCTTCTCAAAAACACCCATGTTGAAGACTATTGTAGAGAGACTGTTTCAACATTATGGATATCCAGTGCCTGAGATGCAAAGTGATGAAGATGCAGTTAATAGATTGGGACTTTTGTTGAAGAAAGTTGAGGGAACTCCTTTATTGTTGGTTCTTGATGATATTTGGTCAAGCTCAGAAACCCTTGTTGAGAAACTTCAATTCCAGATATCAGATTTCAAAATTCTGGTGACTTCAAGGGTTGCATTTCCAAGGCTTAGCACAACATGTATCTTAAAACCTCTTGTTCATGAAGATGCAGTTATACTTTTCCATCACTATGCTCAGATGGAAAACATTAGTTCAGATATTATCGACAAAGATCTCTTCGAAAAGGTTGTAAGAAGTTGCAAAGGTTTACCGCTTGCGATTAAAGTGATTGCTACATCTCTCAGAAATCGACATTATGACTTGTGGAAAAAGATGATGAAGGAACTGTCACCAGGTCATTCTATACTTGATTCTACTAAAGTGATCTTCGATGTTTTGGAAGATAATCCCATAATCAAGGAGTGCTTCATGGACCTAGCCTTATTTCCCGAAGACCACAGAATTCATGTTGCTGCTCTCATTGATATGTGGACAGAGTTGTATGAACTAGATGACAATGGAATAGAAGCAATggaaatcatcaacaaattaGGATCCATGAATCTGGCTAATGTCTTGATAGCAAGGAAAAGTGCAAGTGACTCAGACGATTACAACTACAATAACCACTTTGTCGTCCTTCATGATCTTCTAAGAGATCTTGGGATTTACCAAAGTACTAAGGAACCAATTGAGTTGAGAAAAAGACTGATTTTTGACACGAATGGAAATAAGTGTTTGGGAGAGAAGCAGCAAGGCTTGATGACCCGTATTTGGTCAAAACTTCTGACATTGTTTGTGAAACAAAATCCGCAACAGCTCGCTGCCCGTATACTGTCTGTATCAACTGATGAAACTTGTGTATCAGATTGGTCTCAAATACAACTAGCTCAGGTTGAGGTTATGATTTTAAATCTTCATACAAAGCAGTACTTATTTCCCGATTCAATGGAGAAAATGAGTATGCTCAAAGTTCTGATAATCACAAACTACGGTACCCATCTTTCTCAATTAAATAACTTTGAGCTGCTGGACTCTTTACACAACCTGAAAAGAATCAGACTAGAGCGAATTTATGTTCCTTCCTTTGGGACATTGAAGAATCTGAAAAAACTATCGCTCTACATGTGTACTACTAGAATGGATTTTGAAAAGGGCAGCGTCCTAATTTCAGACGCATTTCCAAATCTAGAAGAATTGAACATTGATTACTGCAAAGATTTGGTGGTATTGCCTACTAGTATATGTGATATCACGCCTTTAAAGAAGCTCAGTGTTACTAATTGCCACAAGCTTTCTTCACTTCCCCAAGATATAGGAAAATTGGAGAATTTAGAACTTCTAAGGCTCAGTTCATGTACTGATTTGGAAGTGGTACCGAATTCCATTGGAAAGCTTTCGAATCTAACAGTTCTTGACATCTCAAACTGCATAAGCCTTTCAAGTTTACCTGAGGAATTTGGTAATCTGTGCAATCTTAGAAATCATTACATGGCAGGCTGTGCAAGTTGTGAATTGCCATTCTCGGTCGTCAATCTTCAAAATTTGAAGGTGATAACGTGCGATGAAGAGACGGCTGCTTCATGGGAAGCTTTCCAATCTATGCTTCCCAATATGAAGATAGAGGTTCCCCATGTTGATGTTAACTTAAATTGGCTTCATTAA 2388 0.3685 MNSTTQLIASTTPFHDVLNTISQIVEKARNDRNTRRLLKSVLKELTPVVRDIQQYNEHLDHPREEIKTLIEQNYATETACNDSYVVADDKESITVKEVKETLYKVREILELLSNENFEQKFNEAGSPIFKGPFGVPENPKFIVGLDIPFSKLKMELLRDGSSTLVLTGLGGLGKTTLATKICWDEHVKGKFKGNIIFVTFSKTPMLKTIVERLFQHYGYPVPEMQSDEDAVNRLGLLLKKVEGTPLLLVLDDIWSSSETLVEKLQFQISDFKILVTSRVAFPRLSTTCILKPLVHEDAVILFHHYAQMENISSDIIDKDLFEKVVRSCKGLPLAIKVIATSLRNRHYDLWKKMMKELSPGHSILDSTKVIFDVLEDNPIIKECFMDLALFPEDHRIHVAALIDMWTELYELDDNGIEAMEIINKLGSMNLANVLIARKSASDSDDYNYNNHFVVLHDLLRDLGIYQSTKEPIELRKRLIFDTNGNKCLGEKQQGLMTRIWSKLLTLFVKQNPQQLAARILSVSTDETCVSDWSQIQLAQVEVMILNLHTKQYLFPDSMEKMSMLKVLIITNYGTHLSQLNNFELLDSLHNLKRIRLERIYVPSFGTLKNLKKLSLYMCTTRMDFEKGSVLISDAFPNLEELNIDYCKDLVVLPTSICDITPLKKLSVTNCHKLSSLPQDIGKLENLELLRLSSCTDLEVVPNSIGKLSNLTVLDISNCISLSSLPEEFGNLCNLRNHYMAGCASCELPFSVVNLQNLKVITCDEETAASWEAFQSMLPNMKIEVPHVDVNLNWLH 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03300 795 PRINTS Disease resistance protein signature 705 721 - -
Tsu04g03300 795 PRINTS Disease resistance protein signature 163 178 - -
Tsu04g03300 795 PRINTS Disease resistance protein signature 240 254 - -
Tsu04g03300 795 PRINTS Disease resistance protein signature 328 342 - -
Tsu04g03300 795 Gene3D - 372 464 IPR036388 -
Tsu04g03300 795 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 12 785 IPR039203 GO:0050832
Tsu04g03300 795 Gene3D Ribonuclease Inhibitor 500 780 IPR032675 -
Tsu04g03300 795 Gene3D - 130 281 IPR027417 -
Tsu04g03300 795 Pfam NB-ARC domain 151 359 IPR002182 GO:0043531
Tsu04g03300 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 387 IPR027417 -
Tsu04g03300 795 SUPERFAMILY L domain-like 455 763 - -
Tsu04g03300 795 Gene3D - 293 371 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03300 Tsu-Chr4 42083398 42103139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03300 168 752 WRKY Transcription Factor Family AT5G45050 21.631 3.27e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03300 - - gmx:112997603 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00655 05 5477370 5486737 Tsu04g03300 04 42083398 42103139 PCT