Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03290 ATGCACCCGTGTGCGGCCTGCAAGCAACAACGTCGAAGGTGCGATTCATCCTGCGAATTAGCTCCATTTTTTCCACTGGAAAACCCGCAACGTTTCAAAGCTGTACACGAAGTGTTTGGAAGGAGCAACGTGTCCAAGATATTGCGGGAAATAAATCCTTCACAACGTGAAACTGCAGCTGATTCGTTGGTGTTTCAGGCCGAGGCTCGTCTGAGGGACCCTATAAATGGGTATTTAAATTATGTTCACAATTGTGAACATCAATTGATGGAAGTTCAACAGGAACTACATAATGTGAAGACCGAAGTCTCCAAATACCTCAGTCCCGAGGTCATTCAATTTGTGATGAATAATCCTAACTGTTTTGGCTTTGAGCCTAACGACATTCAAAATTCAACTGCTCAGTTGGCTGCCGCTCAACACGAACATTTAGAACTATTGCGGCAGAGAATTGATAGGTCTGGCACGAGGTTCAACTCTGTTGATGGTGATAGGTTTGGGCAACATATGGATGCTAATGTTCCTGATCTCGATGGTACAACTATTTTTCGTGCTATTGTCATTCCCCATGATGATTAA 579 0.437 MHPCAACKQQRRRCDSSCELAPFFPLENPQRFKAVHEVFGRSNVSKILREINPSQRETAADSLVFQAEARLRDPINGYLNYVHNCEHQLMEVQQELHNVKTEVSKYLSPEVIQFVMNNPNCFGFEPNDIQNSTAQLAAAQHEHLELLRQRIDRSGTRFNSVDGDRFGQHMDANVPDLDGTTIFRAIVIPHDD 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03290 192 Coils Coil 82 102 - -
Tsu04g03290 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 2 146 - -
Tsu04g03290 192 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
Tsu04g03290 192 Coils Coil 129 149 - -
Tsu04g03290 192 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
Tsu04g03290 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03290 Tsu-Chr4 42029149 42029727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03290 3 158 AS2 family AT5G66870 37.821 5.23e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu04g03290 LOB 5e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03290 04 42029149 42029727 Tsu05g00649 05 5420860 5424414 PCT