Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03285 ATGGTGAACCCTAGAGTCTACTTCGACATCAGTATCGGAGGCGAATTAGAGGGCAGAATCGTCATTGAACTATTCAACGACGTCGTTCCCAAAACCGCCGAAAATTTCCGAGCACTTTGCACCGGCGAAAAAGGAATCGGTCCAAACACCGGCGTTCCTCTTCATTTCAAGGGTTCATGTTTCCATCGTGTCGTCAAAGGCTTCATGATTCAAGGTGGTGACATTTCCGCTGGTGATGGAACTGGAGGTGAATCAATTTACGGTACGAATTTCGATGATGAAAATTTTGACCTAAAACATGAACGGAAAGGGATTTTATCTATGGCGAATACTGGTCCTAATACGAATGGTTCTCAGTtttttattactactactaGAACTCCTCATTTGGATGGAAAGCATGTTGTTTTTGGGAAGGTTGTTAAAGGAATTGGGGTTGTTAGGTCTGTTGAACTAGGTGCAACCGGAGAGGATGATCGTCCGGAACAAGatgttgttattgttgattGTGGTGAACTTGCTGAAGGAGAGGATATGGGGgttattaacttttttaaagATGGTGATACTTTTGCTGATTGGCCTGTTGATCTTGATACCAAATCGGAGGAGCTTGAGTGGTGGATGAATGCTGTTGATTCTATCAAAAGTTTCGGGAATGAACATTATAAGAAGCAAGATTACAAGATGGCTATCAAAAAGTATCGCAAGGCTTTGCGCTATTTGGACATGTGTTGGGAGAAGGATGGTGTTGACCAAGATAAGAGTACTGCTTTAAGGAAGACAAAATCTCAAATCTTTACCAACAGTTCAGCCTGTAAATTGAAATTAGGTGACCTGAATGGAGCTTTACTGGATGCAGACTTTGCAATGCATGATGGAGATAATGCAAAAGCTCTGTTTCGCAAAGGCCAGGTGTATATGTTACTCAATGACCTAGATGCCGCTCTTGAAAGCTTCAAGAAAGCATTAGAATTGGAGCCAAATGATGGAGGGATCAAAAAAGAGTATGCAATTGTCAGGAAGAAGGTTGCTGATAGACATGATAAAGAGAAAAAAGCCTATTCTAAGATGTTCAATTAG 1083 0.4017 MVNPRVYFDISIGGELEGRIVIELFNDVVPKTAENFRALCTGEKGIGPNTGVPLHFKGSCFHRVVKGFMIQGGDISAGDGTGGESIYGTNFDDENFDLKHERKGILSMANTGPNTNGSQFFITTTRTPHLDGKHVVFGKVVKGIGVVRSVELGATGEDDRPEQDVVIVDCGELAEGEDMGVINFFKDGDTFADWPVDLDTKSEELEWWMNAVDSIKSFGNEHYKKQDYKMAIKKYRKALRYLDMCWEKDGVDQDKSTALRKTKSQIFTNSSACKLKLGDLNGALLDADFAMHDGDNAKALFRKGQVYMLLNDLDAALESFKKALELEPNDGGIKKEYAIVRKKVADRHDKEKKAYSKMFN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03285 360 CDD cyclophilin_ABH_like 4 171 - -
Tsu04g03285 360 Gene3D Tetratricopeptide repeat domain 206 360 IPR011990 GO:0005515
Tsu04g03285 360 ProSiteProfiles TPR repeat region circular profile. 297 330 - -
Tsu04g03285 360 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Tsu04g03285 360 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 360 - -
Tsu04g03285 360 SMART tpr_5 212 245 IPR019734 GO:0005515
Tsu04g03285 360 SMART tpr_5 297 330 IPR019734 GO:0005515
Tsu04g03285 360 ProSiteProfiles TPR repeat profile. 297 330 IPR019734 GO:0005515
Tsu04g03285 360 SUPERFAMILY Cyclophilin-like 1 175 IPR029000 -
Tsu04g03285 360 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Tsu04g03285 360 Gene3D - 1 179 IPR029000 -
Tsu04g03285 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Tsu04g03285 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Tsu04g03285 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Tsu04g03285 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Tsu04g03285 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Tsu04g03285 360 SUPERFAMILY TPR-like 205 358 IPR011990 GO:0005515
Tsu04g03285 360 Pfam Tetratricopeptide repeat 297 330 IPR001440 GO:0005515
Tsu04g03285 360 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Tsu04g03285 360 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03285 Tsu-Chr4 41954040 41958039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03285 18 170 U-box Gene Family AT5G67530 44.156 2.84e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03285 K05864 - gmx:100803839 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03285 04 41954040 41958039 Tsu04g03285 04 41954040 41958039 ECH