Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03281 ATGGGTTTGTGCACTTCAAAACCAAATTCTGAACCTCACAATAACATAATCATTCAATTACAACAAGAAATTACTGTTAATTCTGATTCAAATCCAGTAGTTGaaattcaaaaccctaaaaaatcacctttttttcctttttatactCCAAGTCCAGCTAACCGTTTTTTCTCCGGCAAAACTCCGGCGACTCCAAGGAGATTCTTTAAACCGGCGTCTCCGGCGAAGCACATTAGGTCGTTACTTGCTCGGCGTCATGGTTCCGTTAAGCCGAATGCCGGTGCTAGTGTTTCAGAAGGGAGTGAAAGTGAAGGTGTTGCTCCTCTTGATAAgaattttggattttctaaGCATTTTGGTAGTAAATATCAGCTTGGTAAAGAAGTTGGTAGAGGACATTTTGGTTATACTTGTTCTGCTATTGTTAAGGTTAATCATAAGGGTGAGATTAAGGGTCATAATGTTGCTGTTAAGGTTATTCAGAAAGTTAagATGACTACTGCTATTGCTATTGAGGATGTTAGAAGGGAAGTGAAAATTTTGAGAGCTTTGAATGgacataaaaatttgattaaattctATGAGGCTTATGAAGACAATGATAATGTCTATATAGTCATGGAGTTGTGCGAAGGAGGAGAGCTTTTGGACAGAATACTATCGAgAGGTGGGAAATACTCAGAGGAAGATGCAAAAGCTGTCATGACACAAATACTGAATGTTGTTGCATTTTGCCATCTACAAGGTGTTGTTCATCGTGATCTTAAACCTGAGAACTTCTTGTTTTCGACCAAAGACGAGAACTCAGAGCTGAAGGCGATAGACTTTGGCTTGTCGGATTTTGTCAAACCTGATGAACGGCTTAACGATATCGTTGGTAGTGCATACTATGTGGCTCCCGAGGTTCTGCACAGATCTTACAATACAGAGGCTGACACATGGAGTATTGGTGTGATtgcatatattttattatgcggCAGTCGTCCATTTTGGGCACGTACTGAATCCGGGATCTTTCGTTCCGTATTGAAAGCTGATCCAACTTTTGATGAACCTCCTTGGCCTTCTTTGTCAAATGAGGCACAAGATTTTGTTAAGCGATTACTAAATAAAGATCCAAGGAAGAGAATGACTGCAGCGCAGGCATTAGGTCATCCATGGATTAAAAGTTATAAGATTGTAAAAGTACCCCTGGATATTCTAGTGTTCAAGCTCATGAAATCATACATGCGTTCCTCCTCTCTACGGAAATCAGctttaaggGCTCTGTCTAAGACGTTAGCTACTGATGAGCTGAATTATTTGAAGGAGCAGTTTTCACTTTTAGAACCAAACAAAAATGACACCATTGGCTTGGAAAATATCAAAGCGGCCTTGATGAAGAATGCAACAGATGCTATGAAGGAGTCACGCATCCCTGATCTTCTGGCATCACTCAATGCCTTGCAATATAGAAGGATGGATTTTGATGAGTTCTGTGCAGCTGCACTCAGTGTTCATCAACTTGAAGCACTTGACCGGTGGGACCAACATGCACGCTGTGCCTatgaaatttttgaaaaggATGGAAACAGAGCTATAATGATTGAGGAACTAGCTTCGGAGCTTGGCCTTGGTCCATCTGTACCTGTTCATTCTGTTCTTCATGACTGGATTAGGCACACCGATGGAAAGTTAAGCTTCCTAGGGTTTGTTAAGTTGCTTCACGGTCCATCTCGAAGTCTTGTAAAGCCTCAGTAA 1740 0.3874 MGLCTSKPNSEPHNNIIIQLQQEITVNSDSNPVVEIQNPKKSPFFPFYTPSPANRFFSGKTPATPRRFFKPASPAKHIRSLLARRHGSVKPNAGASVSEGSESEGVAPLDKNFGFSKHFGSKYQLGKEVGRGHFGYTCSAIVKVNHKGEIKGHNVAVKVIQKVKMTTAIAIEDVRREVKILRALNGHKNLIKFYEAYEDNDNVYIVMELCEGGELLDRILSRGGKYSEEDAKAVMTQILNVVAFCHLQGVVHRDLKPENFLFSTKDENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYNTEADTWSIGVIAYILLCGSRPFWARTESGIFRSVLKADPTFDEPPWPSLSNEAQDFVKRLLNKDPRKRMTAAQALGHPWIKSYKIVKVPLDILVFKLMKSYMRSSSLRKSALRALSKTLATDELNYLKEQFSLLEPNKNDTIGLENIKAALMKNATDAMKESRIPDLLASLNALQYRRMDFDEFCAAALSVHQLEALDRWDQHARCAYEIFEKDGNRAIMIEELASELGLGPSVPVHSVLHDWIRHTDGKLSFLGFVKLLHGPSRSLVKPQ 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03281 579 Gene3D Transferase(Phosphotransferase) domain 1 215 398 - -
Tsu04g03281 579 CDD STKc_CAMK 122 387 - -
Tsu04g03281 579 SUPERFAMILY Protein kinase-like (PK-like) 120 419 IPR011009 -
Tsu04g03281 579 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 30 574 - -
Tsu04g03281 579 SMART serkin_6 123 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03281 579 ProSitePatterns Protein kinases ATP-binding region signature. 129 158 IPR017441 GO:0005524
Tsu04g03281 579 Gene3D - 406 567 - -
Tsu04g03281 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Tsu04g03281 579 Gene3D Phosphorylase Kinase; domain 1 116 214 - -
Tsu04g03281 579 ProSiteProfiles Protein kinase domain profile. 123 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03281 579 Gene3D - 428 497 - -
Tsu04g03281 579 PANTHER SERINE/THREONINE-PROTEIN KINASE 30 574 - -
Tsu04g03281 579 Pfam Protein kinase domain 123 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03281 579 SUPERFAMILY EF-hand 417 570 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03281 Tsu-Chr4 41931303 41935310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03281 1 577 EF-hand Containing Proteins AT3G50530 71.136 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu04g03281 Pkinase 1.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03281 K00924 - gmx:100803313 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03281 04 41931303 41935310 Tsu05g00645 05 5370349 5374866 PCT