Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03279 ATGGAATCTGAATCTACTACTTCGACTTCTAAggaaaaaattaagaaaatcaagAGAGACATTattgaagttgaagaagaaagtgttccATCAAAACTTTATGCTAAAGAGGAAGCCATATTTGGAGCTGAAGGAGGCTTACCCCAAGCTTTCTTCTTTGAATATGACAATTTACCCCCAAACTATGGGGTTTGGACATTCAAATTGAGAGCTTCTCTAGATGATGAAGGAAGTTTATCCTTGCCGCAAATTACTTCATGTTATGCACAAATGAGagaTCTTAGTCTGCCAATCTCTTACATTCACAAGTTTTTGAGCAAGAAAATTGGTTTTGTGAGCCAAGACGAGGTTGAAATTAAATGTATGGGAACACCTGTGCTCCCAACAACAACAGCAGATGAATTGGTTAAGTTTTGGCTTACTATAAACGAAAAAAATGATGGTACAGAGCATGATCGTCTCAGGATCTATCTAAAATATGGTCGAAAAGTTTCATCACCCTCTTCTTAA 510 0.3373 MESESTTSTSKEKIKKIKRDIIEVEEESVPSKLYAKEEAIFGAEGGLPQAFFFEYDNLPPNYGVWTFKLRASLDDEGSLSLPQITSCYAQMRDLSLPISYIHKFLSKKIGFVSQDEVEIKCMGTPVLPTTTADELVKFWLTINEKNDGTEHDRLRIYLKYGRKVSSPSS 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03279 169 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 63 145 IPR044807 GO:0004842
Tsu04g03279 169 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 63 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03279 Tsu-Chr4 41894888 41897698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03279 81 140 C3H Transcription Factor Family AT3G23060 38.333 1.71e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03279 K16277 - gmx:100778462 93.9745