Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03255 ATGTCAAAAATGGTGGGGGTTGATGAAAATAAGAGGAATCAAATGGTTACACAATATGATGATGGAGGTGTAACCGTGGCATTTCATGGGAGAGAGGTGTATGAGGGTGTTCCTCTTTCTCATTTTTCTAAAAAGCCTTCTTTAAACGATAAACAGAACAAGGCGGCTGAGAATAAATACAAATTCTTGAATAGCCCAACAACACAAGCAACACATGATGAGACACGATCACCCAAGTTTGCAAGCTCAAATAAAGTGACGATTGATGGAACACTTTCTCGCGGTGAGGCCATATCATCTGCTGTGATTCAAGCTGAAGGACTCCGATCAAATTTAAAACCAGAATTCCCTAGTTTTGTGAAGTCATTGGTCAGATCACATGTAGCTAGTTGTTTTTGGATGGGGTTGCCTGTGGCATTTTGTAAAAGACATTTACCTGATAAAGATACAACTATCACTTTGGAAGATGAATCTGGTAGagaatacaaaacaaaatatattgcATGTAAGACAGGATTAAGTGCTGGTTGGAGACAATTTTCTGCTGTGCATAAATTGCTAGAGGGTGATGTAGTTGTCTTCCAATTAGTTGAACCCACCAAATTTAAGGTTTACATAATAAGAGTTAGTGATTCAAAAGAGGTAGATGGGGCCTTTATGAGTTTAGACAGTTACACAAAACAAAAAGTTGGAGGCAAGACTTGTAAAAATATCACAGACACTAATGTGGTAGCATGTAATAgtccaaaaaggaaaaatggtAAACATGTTTCACAAGAcatccaaaagaaaaagaaaaccattGCACCAAAAATGGATACCAAGACTAAACAATTTACAGAACAATTCGAAAATGATAGCGACGAAGCATTCTCGGAAATATTCGAGGGATTTAAAATGCCCGAATTCAAAGATTTAAAAGGCTTTCAAAATTTCAGCATCATAGTAGATGGAATGCCAATCGACGAAGAACTCTCTACCGAAGTTCGAAACAAGTACTACAAATTATGTTACAGTCAACAAGCTTTTCTTCATGACAATCTCATCAGAGGATTGAATTATATGTTAATTGTTGGAATCATATCTGAAATTGTTAATATTGCTGATGCAATAAAAGTCAGTGTGATATCTACGCCGCGTTATGAGTTTTCTAATTGGGATAAAACTTTGCACGCATTTGAAAATTTGGGTATGAATGTTGAATTTTTACGAGTTCGATTGCGCAGACTTGTAAGCATTGCTTACGAAATGGACAATGCCCCAGAGACAAGAAGATATTTGGCGTATAGAACGGAAGATCACAGTCGAGCAGAAAATGAAATTAAGAATATGGAAATTAAGCTTGAAGAATTGAAGGAAGCTTGTAGTGGCTTTGGTGATTATCTTGAGAGTTTGAAACACAAAGCCGAAAGGTATGAACATAAGTTTCAGCAAGAAGTTGCGGCTAATTGGTGA 1455 0.354 MSKMVGVDENKRNQMVTQYDDGGVTVAFHGREVYEGVPLSHFSKKPSLNDKQNKAAENKYKFLNSPTTQATHDETRSPKFASSNKVTIDGTLSRGEAISSAVIQAEGLRSNLKPEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTITLEDESGREYKTKYIACKTGLSAGWRQFSAVHKLLEGDVVVFQLVEPTKFKVYIIRVSDSKEVDGAFMSLDSYTKQKVGGKTCKNITDTNVVACNSPKRKNGKHVSQDIQKKKKTIAPKMDTKTKQFTEQFENDSDEAFSEIFEGFKMPEFKDLKGFQNFSIIVDGMPIDEELSTEVRNKYYKLCYSQQAFLHDNLIRGLNYMLIVGIISEIVNIADAIKVSVISTPRYEFSNWDKTLHAFENLGMNVEFLRVRLRRLVSIAYEMDNAPETRRYLAYRTEDHSRAENEIKNMEIKLEELKEACSGFGDYLESLKHKAERYEHKFQQEVAANW 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03255 484 SMART B3_2 119 210 IPR003340 GO:0003677
Tsu04g03255 484 SUPERFAMILY DNA-binding pseudobarrel domain 112 210 IPR015300 -
Tsu04g03255 484 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 17 420 - -
Tsu04g03255 484 CDD B3_DNA 117 208 IPR003340 GO:0003677
Tsu04g03255 484 ProSiteProfiles B3 DNA-binding domain profile. 119 210 IPR003340 GO:0003677
Tsu04g03255 484 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 17 420 IPR044837 -
Tsu04g03255 484 Coils Coil 434 454 - -
Tsu04g03255 484 Pfam B3 DNA binding domain 119 208 IPR003340 GO:0003677
Tsu04g03255 484 Coils Coil 462 482 - -
Tsu04g03255 484 Gene3D - 101 212 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03255 Tsu-Chr4 41491940 41496243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03255 101 216 B3 DNA Binding Superfamily AT3G19184 50.862 1.08e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu04g03255 B3 5.8e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03255 - - gmx:100819237 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03255 04 41491940 41496243 Tsu04g03255 04 41491940 41496243 ECH