Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03253 atggatGTTCCCATTTGGAATGACAACGACAACATTGTTGCAACATCACTATTAccaaataaagaagaagaaaactctATCATAGTATCTACTCTCGTTAATGTTCTTTCCTCGTCCAACTCCAACAACAATGTTGCTGTTCCTGTTCCTGTTTCGGATAAAGAAGCAGCCACGTCATCATATTCAAGTGGGTCCCTTTCTCTCTTGTCTTATGAGAACCTTTACGATGTTAACACGTGTAGTGCATGTAAAATCAACGGCTGTTTAGGTTGCAGATTATTTGCTGAAaaggatgaaaagaaaaagaagaaatacaGAGGAGTGAGACAGAGAGCATGGGGAAAATGGGTGGCTGAGATTAGAGACCCAAAAAGAGCAACACGTGTATGGCTTGGAACATTTCAAACTGCTGAGAATGCTGCAAGAGCTTATGATCAAGCTGCTATTAAGTATCATGGTGTTAGAGCTAAactcaattttgaattttctgaTTATAATCATTTAGTTACTACTCATGATGatgagaagaagaaacaaagtgaaaattttgaagaaagaaaaactaacataatatcATTTGGGTCTACAAGTGAACAAGACTAG 603 0.3134 MDVPIWNDNDNIVATSLLPNKEEENSIIVSTLVNVLSSSNSNNNVAVPVPVSDKEAATSSYSSGSLSLLSYENLYDVNTCSACKINGCLGCRLFAEKDEKKKKKYRGVRQRAWGKWVAEIRDPKRATRVWLGTFQTAENAARAYDQAAIKYHGVRAKLNFEFSDYNHLVTTHDDEKKKQSENFEERKTNIISFGSTSEQD 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03253 200 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Tsu04g03253 200 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Tsu04g03253 200 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 187 - -
Tsu04g03253 200 MobiDBLite consensus disorder prediction 171 185 - -
Tsu04g03253 200 SUPERFAMILY DNA-binding domain 104 162 IPR016177 GO:0003677
Tsu04g03253 200 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Tsu04g03253 200 MobiDBLite consensus disorder prediction 171 200 - -
Tsu04g03253 200 MobiDBLite consensus disorder prediction 186 200 - -
Tsu04g03253 200 CDD AP2 105 161 IPR001471 GO:0003700|GO:0006355
Tsu04g03253 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 20 187 - -
Tsu04g03253 200 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Tsu04g03253 200 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Tsu04g03253 200 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03253 Tsu-Chr4 41464500 41465102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03253 20 171 AP2-EREBP Transcription Factor Family AT4G34410 39.791 2.87e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g03253 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03253 - - cam:101497463 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03253 04 41464500 41465102 Tsu04g03253 04 41464500 41465102 ECH