Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03252 ATGTCGCAGCGATCGGCACCGGCGCCTTTTTTGAGCAAGACATATGAGATGGTGGATGATCCTCTCACTGATGATGTGATTTCTTGGAGTGAAAATGGTAACACTTTTGTTGTGTTGAAACATGCTGAATTTGCTAGGGATTTGCTACCAAAGTACTTTAAGCACAACAATTTTTCAAGCTTTGTTCGCCAACTTAACACCTATGGGTTCCGAAAAATTGTTCCTGACAAATGGGAATTCGCCAACGAGAATTTCAAGCGAGGACAAAGGCAGCTACTAGCAACAATCAAGCGTCGGAAGGTCCAATCGCCAGTGATCGGAAGACCCATCGGCAACGGACTAAACTCAACGTCAAACTCCGGTGGTGAAGACATGGGTTCAACCTCAACTGGATCGGTGGAACGAAATACCTACTTCGCTGACCTATCAAGTGAGAACGAGAAACTGAAAAAGGACAACGAGAAACTAAGCGTTGAATTGGCACTTGCAAAGAAGCAGTGCGGCGAGTTGGTAGCTTTTCTTCGAAATATTACCAACATACCGCCCGATCAAATTAACCGCATCATTCGGCAAGGAACAAATGGGTCCAGCCTCGATGGGGTGCATTTCTATGACGACTTGAATACCACAGCGGTAGGTGAAGGTAAATGTGAAGGTTTGAAACTATTTGGTGTGAAGATTGACATGGCTAATGCTAAGGATGACTGTCGCAAGAGAGGGCGTGAAGACTCAATTGGTGGTGCCAACAACAAGTTGAAGACTGTTGTTTAG 771 0.4514 MSQRSAPAPFLSKTYEMVDDPLTDDVISWSENGNTFVVLKHAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQRQLLATIKRRKVQSPVIGRPIGNGLNSTSNSGGEDMGSTSTGSVERNTYFADLSSENEKLKKDNEKLSVELALAKKQCGELVAFLRNITNIPPDQINRIIRQGTNGSSLDGVHFYDDLNTTAVGEGKCEGLKLFGVKIDMANAKDDCRKRGREDSIGGANNKLKTVV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03252 256 Coils Coil 139 166 - -
Tsu04g03252 256 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu04g03252 256 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu04g03252 256 MobiDBLite consensus disorder prediction 107 131 - -
Tsu04g03252 256 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 253 - -
Tsu04g03252 256 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 253 IPR027725 -
Tsu04g03252 256 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu04g03252 256 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu04g03252 256 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu04g03252 256 MobiDBLite consensus disorder prediction 109 131 - -
Tsu04g03252 256 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu04g03252 256 Gene3D - 2 100 IPR036388 -
Tsu04g03252 256 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03252 Tsu-Chr4 41456410 41460643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03252 2 192 HSF AT4G36990 58.416 1.32e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu04g03252 HSF_DNA-bind 1.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03252 K09419 - gmx:100801638 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00626 05 5207824 5210358 Tsu04g03252 04 41456410 41460643 PCT