Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03247 ATGGAGCAACGAAAGCTTGTGGTTTTGGGTATTCCATGGGACGTTGATACTGATGGCTTGAAAGAATATATGAGCAAATTTGGTGAGCTAGAAGATTGTATTGTTATGAAGgaacGGTCAACTGGCCGGTCTCGCGGTTTTGGATATGTTACATTTGCATCATTGGATGATGCTAAGAATGTGCTATCTAGTGAACACAACCTTGGCAACAGGACGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTCAAAAAGGTTACCAGAATCTTTGTGGCTAGGATTGCACCATCAGTAACAGAAGAAACTTTTAGGAGTCATTTTGAGAAATATGGTGAAATAACCGATTTATACATGCCAAAGGATCGAGGATCAAAAACACATCGTGGAATTGGTTTTATAACTTTTGCAAGTGCAGAATCTGTAGAGAACTTGATGAAAGAAACCCATGAACTGGGAGGTTCTGATGTGGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGAACCAGAACGTCACAACAAGGAGGATATGGTGCATATAATCCATATAGTTCTGCACCAACTAGATATGCAGCACTTGGTGCTCCAACTATGTATGATCATCCTGGTTCAATTTATGGAAGGTCAGAACCTGTTCGTGGAATGAGcaaaaagatttttgttggtcGTCTTCCCCCGGAGGCAACCACTGAGGATCTTCGCCTGTATTTTGGAAGATTTGGCCATATATTAGATGCTTATATACCTAGGGATGTCAAGAGATCTGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCGGACGAGGGTGTTGCAGATCGTGTCTCTCGGAGATCTCATGAAATTTGTGGACATCAgGTTGCCATAGATTCAGCCGCCCCTCTTGATGAGGCAGGGCCCAGTGGGAACACTATGTTGAATAGCATGGATACTTTCAGGGGATATGGCGGACCTGTGAGGCCTTATTTTGATCAAAGTCCTGTGAGGCCACCTTATGGAAGAGTGTACGATAACCTGGACTTCGATGATTGGAGTTATGGAGTTGCTAGTAGAAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1119 0.429 MEQRKLVVLGIPWDVDTDGLKEYMSKFGELEDCIVMKERSTGRSRGFGYVTFASLDDAKNVLSSEHNLGNRTLEVKVATPKEEMRAPVKKVTRIFVARIAPSVTEETFRSHFEKYGEITDLYMPKDRGSKTHRGIGFITFASAESVENLMKETHELGGSDVVVDRATPKEDDFKPIGRTRTSQQGGYGAYNPYSSAPTRYAALGAPTMYDHPGSIYGRSEPVRGMSKKIFVGRLPPEATTEDLRLYFGRFGHILDAYIPRDVKRSGHRGFGFVTFADEGVADRVSRRSHEICGHQVAIDSAAPLDEAGPSGNTMLNSMDTFRGYGGPVRPYFDQSPVRPPYGRVYDNLDFDDWSYGVASRRPSRADWRYRPY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03247 372 SMART rrm1_1 5 76 IPR000504 GO:0003723
Tsu04g03247 372 SMART rrm1_1 93 164 IPR000504 GO:0003723
Tsu04g03247 372 SMART rrm1_1 228 299 IPR000504 GO:0003723
Tsu04g03247 372 Gene3D - 84 196 IPR012677 -
Tsu04g03247 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 284 IPR000504 GO:0003723
Tsu04g03247 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Tsu04g03247 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 153 IPR000504 GO:0003723
Tsu04g03247 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Tsu04g03247 372 PANTHER OS01G0945800 PROTEIN 3 372 - -
Tsu04g03247 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Tsu04g03247 372 SUPERFAMILY RNA-binding domain, RBD 89 189 IPR035979 GO:0003676
Tsu04g03247 372 Gene3D - 1 83 IPR012677 -
Tsu04g03247 372 Gene3D - 224 307 IPR012677 -
Tsu04g03247 372 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Tsu04g03247 372 MobiDBLite consensus disorder prediction 170 189 - -
Tsu04g03247 372 SUPERFAMILY RNA-binding domain, RBD 226 326 IPR035979 GO:0003676
Tsu04g03247 372 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 372 - -
Tsu04g03247 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 303 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03247 Tsu-Chr4 41349134 41354483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03247 6 276 Eukaryotic Initiation Factors Gene Family AT2G36660 22.182 1.91e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03247 K14411 - gmx:100795240 615.15