Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03244 ATGGATGTGGACATAGTCAAAACTTCTAGTGATGGTAGCATGGACATGATATCAATGATGATGCAAATGGAAAAGTTTCCTGATCAATTCTCTGAACCTTTTTATCCCACTACTTACCAAGATATAATCACCAACAACAATAACACTGTTCCATTATTTAACCTATCATCTCCACAACCTTTGAATAATATTGATCCAAATCTACACTCCAATGTCAACTTCCAACAACACTTGAATATCTCACCATCACATCTTCAAACTAACTCTTCATCATTTCCTTACTCTAACTCATTGAATTCTTCTGATAAGAAGAATTCGATGGCAGCGATGAGGGAAATGATATTTAGGATAGCGGTGATGCAACCGATACATATTGATCCGGAATCGATTAGGCCACCGAAGAGAAGGAACGTGAAGATATCTAAGGATCCTCAAAGCGTAGCGGCGCGACATAGAAGGGAAAGGATAAGTGAAAGGATAAGGATATTACAAAGATTAGTACCTGGTGGAACAAAAATGGACACTGCTTCTATGTTAGATGAAGCTATACATTATGTGAAGTTTTTGAAGAAACAAGTTCAAACATTGGAACAAGTAggtgctaataataataatagatcatcatcatcatcacaaatgTCACACATTGGTGGTGGTGTTATGAACAACTTTAATGTGAATTATTCTGGTTTGATGATGAAGGGTTGTCAACCTTTTCAAATGGTGGGGTCCACTTCTAAACAATTGCTTAGCTAG 756 0.3519 MDVDIVKTSSDGSMDMISMMMQMEKFPDQFSEPFYPTTYQDIITNNNNTVPLFNLSSPQPLNNIDPNLHSNVNFQQHLNISPSHLQTNSSSFPYSNSLNSSDKKNSMAAMREMIFRIAVMQPIHIDPESIRPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANNNNRSSSSSQMSHIGGGVMNNFNVNYSGLMMKGCQPFQMVGSTSKQLLS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03244 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Tsu04g03244 251 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 244 IPR045843 GO:0003700|GO:0006355
Tsu04g03244 251 PANTHER TRANSCRIPTION FACTOR HEC2 1 244 - -
Tsu04g03244 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 199 IPR036638 GO:0046983
Tsu04g03244 251 Pfam Helix-loop-helix DNA-binding domain 150 189 IPR011598 GO:0046983
Tsu04g03244 251 Gene3D - 139 214 IPR036638 GO:0046983
Tsu04g03244 251 CDD bHLH_AtIND_like 141 197 - -
Tsu04g03244 251 SMART finulus 146 195 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03244 Tsu-Chr4 41313731 41314486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03244 10 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 56.744 7.75e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g03244 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03244 - - gmx:100800816 263.077