Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03240 ATGGATTGGGTACGAGGTGAAACAATTGGAAGAGGAAGCTTTGCAACAGTTAATTTAGCTATACCCAGAggaaattcaaaatcaaattcaactcTTTTTTCTTCTCCGACAGCCGTTAAAACATCCGAGGTATCAACTTCGTATTCACTCAAAAACGAGAAACAAATTCTTGATTGTTTAGGTTCACACAAACGAATCATTAGTTGTTTTGGAGATGATCATACATTTGAGAATGGTGAAAAGTATTACAATTTATTTCTTGAATATGCTTCCGGTGGAACTCTCGCCGATCAAGTGAAATTCCACGGCGGCCGGATTCCAGAACAACACATTCGCCGTTACACGAGGTCGATTATCCAGGGTTTAAGCCATATTCATTGCAATGGATTTGTTCATTGTGATATAAAGCTTCAAAACATTCTAGTTTTCCACGATGGTGAAATCAAAATTGCTGATTTTGGTCTTTCGAAGAAAACAGGGGAAAAACAGAGGTTTGAATGCAGGGGAACTCCGCTGTTTATGTCGCCGGAATTAGTGAACGGCGGCGAGAATGAGTCTCCGGCGGATATTTGGGCACTTGGGTGTGCGGTGGTGGAAATGGTAACTGGAAAACCAGCGTGGAATTTGGAGAAAGACTCGAATATTTGGTCGTTGTTGCGTCGAATTGGTGCCGGAGAAGAATCGCCGGTGATACCCGAAGAGTTATCGAAAGAGGGAAAAGATTTTGCTGAGAAGTGTTTTGTGATTGATCCAAGAAAGAGATGGACGGCTGAGATGCTTTTGAATCATCCCTTTGTTGAAGAAGTGAAGAGTGTTAATGAATCATCACCAAGAACTCACTTTGATTTCAATGATTGGGTTTCTGATGTTAGTGATTCGGTTCCGAATTCGCCGGAATCTGAAGAGTTTTGTCAATGGGTTTCTAATGTTAGTGATTGGGACGTTGAATCTAGTTTTTGTTCCGCGGTGGATCGGCTCAGGCAGCTTGTGACGGTTGAAGGGCCGCCGAGTTGGTCGGAATCAGATAGTTGGATTAGTGTTAGGTGA 1047 0.4164 MDWVRGETIGRGSFATVNLAIPRGNSKSNSTLFSSPTAVKTSEVSTSYSLKNEKQILDCLGSHKRIISCFGDDHTFENGEKYYNLFLEYASGGTLADQVKFHGGRIPEQHIRRYTRSIIQGLSHIHCNGFVHCDIKLQNILVFHDGEIKIADFGLSKKTGEKQRFECRGTPLFMSPELVNGGENESPADIWALGCAVVEMVTGKPAWNLEKDSNIWSLLRRIGAGEESPVIPEELSKEGKDFAEKCFVIDPRKRWTAEMLLNHPFVEEVKSVNESSPRTHFDFNDWVSDVSDSVPNSPESEEFCQWVSNVSDWDVESSFCSAVDRLRQLVTVEGPPSWSESDSWISVR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03240 348 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 325 - -
Tsu04g03240 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Tsu04g03240 348 SMART serkin_6 3 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03240 348 ProSitePatterns Protein kinases ATP-binding region signature. 9 40 IPR017441 GO:0005524
Tsu04g03240 348 SUPERFAMILY Protein kinase-like (PK-like) 3 302 IPR011009 -
Tsu04g03240 348 ProSiteProfiles Protein kinase domain profile. 3 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03240 348 Pfam Protein kinase domain 5 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03240 348 CDD STKc_MAPKKK 2 266 - -
Tsu04g03240 348 Gene3D Transferase(Phosphotransferase) domain 1 2 320 - -
Tsu04g03240 348 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03240 Tsu-Chr4 41275660 41277013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03240 1 348 MAP Kinase Kinase Kinase AT4G36950 52.646 3.09e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Tsu04g03240 Pkinase 1.1e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03240 - - aprc:113858661 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00610 05 5025152 5025634 Tsu04g03240 04 41275660 41277013 PCT