Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03238 ATGAATGACGATGTTTCCCTCTTTGAGGCATATGGTATGAGGAGAATGGATGCTCCATATATGCCTGCTGCTCAAACTCATATGAGAAGATTTACCGGTCTAACAAATAATAGTCCAAGCATGAATCTGAATTTACCTTTAGGGAGAAATGAACTAGTTTACAACACTGGTGAAAACTATAATCAAAATGAAGCTATCCGATATATTTCAGAAATGCACCCTTCTTTGACTTCAAGTTTGGTGAATACTAGAAGTTCAAATGAAATTTTCAGTATCACAAATACTCCTTCGAGAATGAATTATGATGATATTTCCCTCTTTGAGGCATATGGTATGAGGAGAATGGATGCTCCATATATTTTCGAAGGAGTAGAACAAACAATGCACCCTTCTTTGACTTCAAGTTTGGTGAATACTAGAAATGCAAATGAAATTCTCAGTATCACAAATACTCCTTCGAGAATGAATTATGACGATGTTTCCCTCTCTGAGACATATGGTATGAGGAGAATTGATGTTCCACATATGCTTGCTGCTGAACCTCACATGAGAAGTTTTCCCCCTCTAACAAATAACAATGCAGGCATAAATCTCAATTTCTCTTTAGGGAGAAATGAACGACTTTACAACACTGGTGAAAACTATAATCAAAATGAAGCTATTCGATATATTTCAGATGGAGTAGAACAATCAATGCACTCTTATTTGACCTCAAATTTGGTGAATACTAgaaatttaaatgaaatttttagtaTCACAAATACTCCATCGAGAATGAATGACGATGTTTTCCCCTTTGAGGCATATGGTATGAGGAGAATGGATGCTCCATATATGCCTGCTGCTCAAACTCATATGAGAAGTTTTACCAATCTAGCAAATAATAGTGCAAGCATGAATCAAAATTTATCTTTAGGGAgaaatgaacaattttacaGCACTGGTgaaaattataatcaaaatgAAGCTATCCGGTATATTTCAGATGGAGTAGAACAATCAATGCACTCTTCTTTGACCTCAAGTTTGATGAATCCTAGAAGTGTAAATGAAATTTTCAGTATCACAAATGGTCTTTTGAGTATGAATGACGATGTTTCCCTCTCTGGGTCGACATATGGTATGAGGAGAAATGATGTTCCATATATGCCTGCTACTCAAACTCATACGAGAAGTTTTACCCGTTTAGCAAATAACGGCCCAAGCATAAATCTGAATTTGTCTTTAGGTTTATCTTCGAGTACTCCAACTAGAGTAGAGAGTGATCGCAGAAGAACTTCTCCTGCGATAACAAATGCAAGAAATAACAGGGAATCTGTGGGATTTATGGAGAATCAAGAGGCTCGTTTGAATTTACCATTAAAAAGAACAGTAACCCAAAGAGAAGTTGGTGAAAGTTCAACAAGTTATTTTCCTTATGCTCCATCAGCTAGAAATTCTTTATCAGAGTACCAACATAGCTCAGGTTCAACAAGTACTGCAATTCAAATTGGTAGAAATTATGAACAAATACCCCATATTCAGTTTAGACGTAATCCTGAACTTATGAgagaaatgatgagagaaatGATGGTGCGGATTGAGGAGCACAGGATGCATTGTATAAATGAAAGGGGGCTTACAGAGGGTGAAATAATGAAGTATATTAATTGTGCTAATTTTGAGGTCCCAGCTGAAGGAACTTCAGAAATTCAAGAACTGTGTTGCATTTGTCAGGAGGCATTTGTAATTGGAGAAGGAATCGGAAAGCTAGATTGTGCGCATATTTTTCACATGAATTGCATAACACAATGGCTGTCAGAAAAGAACATATGCCCCCTTTGTAAATGTAGGGGATTGTTtgttggtgatgatgatgaaattgaTCTTTGCTAA 1875 0.3499 MNDDVSLFEAYGMRRMDAPYMPAAQTHMRRFTGLTNNSPSMNLNLPLGRNELVYNTGENYNQNEAIRYISEMHPSLTSSLVNTRSSNEIFSITNTPSRMNYDDISLFEAYGMRRMDAPYIFEGVEQTMHPSLTSSLVNTRNANEILSITNTPSRMNYDDVSLSETYGMRRIDVPHMLAAEPHMRSFPPLTNNNAGINLNFSLGRNERLYNTGENYNQNEAIRYISDGVEQSMHSYLTSNLVNTRNLNEIFSITNTPSRMNDDVFPFEAYGMRRMDAPYMPAAQTHMRSFTNLANNSASMNQNLSLGRNEQFYSTGENYNQNEAIRYISDGVEQSMHSSLTSSLMNPRSVNEIFSITNGLLSMNDDVSLSGSTYGMRRNDVPYMPATQTHTRSFTRLANNGPSINLNLSLGLSSSTPTRVESDRRRTSPAITNARNNRESVGFMENQEARLNLPLKRTVTQREVGESSTSYFPYAPSARNSLSEYQHSSGSTSTAIQIGRNYEQIPHIQFRRNPELMREMMREMMVRIEEHRMHCINERGLTEGEIMKYINCANFEVPAEGTSEIQELCCICQEAFVIGEGIGKLDCAHIFHMNCITQWLSEKNICPLCKCRGLFVGDDDEIDLC 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03238 624 ProSiteProfiles Zinc finger RING-type profile. 568 609 IPR001841 -
Tsu04g03238 624 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 539 615 IPR045191 GO:0061630
Tsu04g03238 624 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE 539 615 - -
Tsu04g03238 624 SMART ring_2 568 608 IPR001841 -
Tsu04g03238 624 Pfam Ring finger domain 568 609 IPR001841 -
Tsu04g03238 624 CDD RING-H2_TTC3 567 609 - -
Tsu04g03238 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 546 612 IPR013083 -
Tsu04g03238 624 SUPERFAMILY RING/U-box 567 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03238 Tsu-Chr4 41240021 41243082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03238 516 613 C3H Transcription Factor Family AT2G15530 34.545 2.45e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03238 - - mtr:MTR_5g078900 101.293