Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03223 ATGCTTCATCCATCGTGGTTCAATTCCTTCTCTAACACCCGCAAACGTGTCATGGAAGCACTAGTGAAGCGATTAAAATCCGAAGCTGCATCAAACTATTCAATTAAGTTCATCGATCACATTCATCATGCAATTTTTTGCCTACTAGTTTTTATGTGTTTCGGTGAAGAAGTTGGCAACGAGAAAATTGAAGTCATTAAGCACGTCCAACGCCTTTGGATTATAAGCTCCGGAAAATTTGGTGTACTAAACTATTTTCCAAAAGCAATCTCTTACATGTTGTTCCGAAAGCGTTGGAATGAGTATTTGAATCTTCAAAAGGATCAAAAGGATCTTGATGACGATGAACTTGCAGCGCTCTGTTCAAAGTTTCTAACTGCAGGAACGGATACAACTTCATCTGCATTGGAGTGGGTTATGGCAAATTTGGTGAAATATGGACATGTGCAACAGAGAATAGTGGAGGAAATTCGAGAGGTGGTTGCTCATAGAGAAGAAAGAGAAGTAAAAGAGGAAGATTTGGAGAAGTTACCATATCTTAAGGCTGTGATTTTAGAAGGGTTAAGGCGTCACTCTCCTTCTCACTATTTAATTCCACATGCAGTGACTGAGGATGTGATTTTTAATGGTTACTTGGTGCCAAAGAATGGGACAGTTAATTTTATGGTGGCAGAGGTTGGGTGGGATCCGACAGCTTGGGAGGATCCAATGGCGTTCAAGCCAGAGAGGTTTGAGGAAAGTAGTAGCAGATTTGATGTTACTAGTCAAACTGAGATAAAGATGATGCCATTTGGAGCAGGGAGAAGGATTTGTCCTGCTTATCACTTGGCAATGCTCCATTTGGAATACTTTGTGGCAAATATGATTTGGAACTTTGAATGGAATACTTTATCACCTGAAAGTAATGTTGATTTGGCCCTATTCCTTTGGGAGGAAGACCTTGTTGTGCGTTTGAGAGAGGTCTTGGCGTCGGCGAATCTATCTTGTGAGGATGACGGTTGGAGTTGGCTTCCGGATCCGGATGGGGTGTTCACGGTAAAATCTACTTATCTTTACCTTGCGAAGGAACTCCGGTCGGGAGATGAGTTGGATGAAGGTAGGGCAGTGATTTTTGATCAAATTTGGGATAGTGCGGCGCCGTCTAAGGTTATAGCGTTCTCGTGGCAACTCCTTTATGATCGGATTCCATCTAGGAAGAACCTCAATATTCGGGGCATCTTAGGTACGGAGGTTCCTTGGGAGTGTGTGGGGTGTGTTGGAAGTGTTGAATCTTGCATTCATCTTTTTTTGCATTGTCCTAGTGCTATGATGGTGTGGTATGACATCTTTAGGTGGCTTGGTTTGGTGATTGTGATCCCCCCTTCGTTGTTTTCACTTTTTGAAGTGATGAGGGTTCGGCGAGAAATGTAA 1410 0.4262 MLHPSWFNSFSNTRKRVMEALVKRLKSEAASNYSIKFIDHIHHAIFCLLVFMCFGEEVGNEKIEVIKHVQRLWIISSGKFGVLNYFPKAISYMLFRKRWNEYLNLQKDQKDLDDDELAALCSKFLTAGTDTTSSALEWVMANLVKYGHVQQRIVEEIREVVAHREEREVKEEDLEKLPYLKAVILEGLRRHSPSHYLIPHAVTEDVIFNGYLVPKNGTVNFMVAEVGWDPTAWEDPMAFKPERFEESSSRFDVTSQTEIKMMPFGAGRRICPAYHLAMLHLEYFVANMIWNFEWNTLSPESNVDLALFLWEEDLVVRLREVLASANLSCEDDGWSWLPDPDGVFTVKSTYLYLAKELRSGDELDEGRAVIFDQIWDSAAPSKVIAFSWQLLYDRIPSRKNLNIRGILGTEVPWECVGCVGSVESCIHLFLHCPSAMMVWYDIFRWLGLVIVIPPSLFSLFEVMRVRREM 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03223 469 PANTHER CYTOCHROME P450 110 306 - -
Tsu04g03223 469 Pfam zinc-binding in reverse transcriptase 344 439 IPR026960 -
Tsu04g03223 469 Pfam Cytochrome P450 106 298 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03223 469 PRINTS P450 superfamily signature 182 193 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03223 469 PRINTS P450 superfamily signature 127 144 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03223 469 PRINTS P450 superfamily signature 262 271 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03223 469 Gene3D Cytochrome P450 1 320 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03223 469 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 264 273 IPR017972 GO:0005506|GO:0016705
Tsu04g03223 469 PANTHER CYTOCHROME P450 1 112 - -
Tsu04g03223 469 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03223 469 PRINTS E-class P450 group I signature 271 294 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03223 469 PRINTS E-class P450 group I signature 222 246 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03223 469 PRINTS E-class P450 group I signature 261 271 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03223 469 PRINTS E-class P450 group I signature 116 133 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03223 469 PRINTS E-class P450 group I signature 136 162 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03223 469 SUPERFAMILY Cytochrome P450 2 318 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03223 469 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 1 112 - -
Tsu04g03223 469 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 110 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03223 Tsu-Chr4 40819590 40821761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03223 1 295 Cytochrome P450 AT1G64940 44.767 3.98e-104 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03223 K24184 - gmx:100795683 349.747