Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03217 ATGGTTGAATCTGATTATGTGCCTCTGCCAGATTATAATGAAATAGGAGCGGTCAAAAAGGGAACTGAGACTTCAAGAACTGTTCAAGAACAGCGAAAGGTTATTCGTTGGAAAGAAGCTGAACATAGGTTATTTCTTCAAGGCTTGGAGAACCATGGATGGGGCAACTGGCGAAGTATATCAAGTAACTGTGTGGTAACAAGAACACCTACACAAGTAGCAAGCCATGCTCAGAAATATAAAATTCACCAGAATtcaaaggagaagaagaaagaaagaaagcgATCCAGCATACATGATGTCACCCATGTAAAGAAAGATGACATTTCAGCACCTCAGGGACCAATTACCGGTCAAGCAAGCGGTTCTGCAGCAAGTTCTTCTGGACAATCAGCCGAACAAGCTCCTCCATCCCCACCTGCTGGAATTTATGCTGCTCCTAGGATCGAGCACTCTATTGGAGGACCCCTTGTATCTGCAGTTGGAACTCCAGTGAATCTTACTCCTGCTGGACACATGGCTTATGAACTTGGACCGGATTCTGAGACAGTTATGCCCGGCGAACCAATTAACTTGGGCCCTATGACATATCCCATGCAATATACATATGCTCAACCACATTATGTGGATTTGATTGATGATGTCAACCACATTGAATCTGGTTATGTGCCTCTGCCGGATTATAACGAAAGAAGAGCTGTCAAAAAGGGAACTGAGACTTCAAGAACTGTTCAAGAACGGCGAAAGGTTGTTCGTTGGACAGAAGCTGAACATAGGTTATTTCTTCAAGGCTTGAAGAACCATGGATGGGGTGACTGGCGAAGTATATCAAAGAAATGTGTGATAACAAGAACACCTACACAAGTAGCAAGCCATGCTCAGAAATATAAAATTCACCAGAATtcaaaggagaagaagaaagaaagaaagccATCCCGCATACATGATGTCACCCATGTAAAAAAAGATGACATTTCAGCACCTCAGGGACCAATTACCGATCAAGCTGCAGCAAGTTCTTCTGGACAATCAGCCGAACAAGCTCCTCCGTCCCTTGTATCTGCAGTTGGCACTCCAGTGAATCTCACTGCTGCCGGACAGTTATGCCAGGGAAACCAATGA 1122 0.4207 MVESDYVPLPDYNEIGAVKKGTETSRTVQEQRKVIRWKEAEHRLFLQGLENHGWGNWRSISSNCVVTRTPTQVASHAQKYKIHQNSKEKKKERKRSSIHDVTHVKKDDISAPQGPITGQASGSAASSSGQSAEQAPPSPPAGIYAAPRIEHSIGGPLVSAVGTPVNLTPAGHMAYELGPDSETVMPGEPINLGPMTYPMQYTYAQPHYVDLIDDVNHIESGYVPLPDYNERRAVKKGTETSRTVQERRKVVRWTEAEHRLFLQGLKNHGWGDWRSISKKCVITRTPTQVASHAQKYKIHQNSKEKKKERKPSRIHDVTHVKKDDISAPQGPITDQAAASSSGQSAEQAPPSLVSAVGTPVNLTAAGQLCQGNQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03217 373 SUPERFAMILY Homeodomain-like 31 86 IPR009057 -
Tsu04g03217 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 245 301 IPR017930 -
Tsu04g03217 373 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
Tsu04g03217 373 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 250 300 IPR006447 GO:0003677
Tsu04g03217 373 ProSiteProfiles SANT domain profile. 252 301 IPR017884 -
Tsu04g03217 373 CDD SANT 36 81 IPR001005 -
Tsu04g03217 373 PANTHER TRANSCRIPTION FACTOR KUA1 19 201 - -
Tsu04g03217 373 PANTHER TRANSCRIPTION FACTOR KUA1 204 357 - -
Tsu04g03217 373 MobiDBLite consensus disorder prediction 332 354 - -
Tsu04g03217 373 MobiDBLite consensus disorder prediction 305 323 - -
Tsu04g03217 373 SUPERFAMILY Homeodomain-like 246 302 IPR009057 -
Tsu04g03217 373 MobiDBLite consensus disorder prediction 75 145 - -
Tsu04g03217 373 MobiDBLite consensus disorder prediction 91 107 - -
Tsu04g03217 373 Pfam Myb-like DNA-binding domain 252 297 IPR001005 -
Tsu04g03217 373 Pfam Myb-like DNA-binding domain 36 81 IPR001005 -
Tsu04g03217 373 Gene3D - 35 86 - -
Tsu04g03217 373 Gene3D - 251 302 - -
Tsu04g03217 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 85 IPR017930 -
Tsu04g03217 373 ProSiteProfiles SANT domain profile. 36 85 IPR017884 -
Tsu04g03217 373 MobiDBLite consensus disorder prediction 291 354 - -
Tsu04g03217 373 MobiDBLite consensus disorder prediction 114 135 - -
Tsu04g03217 373 CDD SANT 252 297 IPR001005 -
Tsu04g03217 373 PANTHER TRANSCRIPTION FACTOR SRM1 19 201 - -
Tsu04g03217 373 PANTHER TRANSCRIPTION FACTOR SRM1 204 357 - -
Tsu04g03217 373 SMART sant 249 299 IPR001005 -
Tsu04g03217 373 SMART sant 33 83 IPR001005 -
Tsu04g03217 373 ProSiteProfiles Myb-like domain profile. 245 297 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03217 Tsu-Chr4 40766639 40768756 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g03217 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03217 - - gmx:100819797 211.46