Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03216 ATGGATGAATTGGGAAGTAGTAGCAGTTATTGGAGTAGAGAGCAAGATAAAGCTTTTGAAAATGCATTGGCAAATCATGCCGAGGAATGGGAGCAATTTGCGTCCTATGTAACTGGGAAAAGTTTGGAAGAGATTAAGCGTCATTATGTGgatttgattgatgatgttaaCCACATTGAATCTGGTTATGTGCTTATACCGGATTATAACGAAATAAGAGCTGTCAAAAAGGGAACTGAGACTTCAAGAACTGTTCAAGAACGGCGAAAGGGTATTCCTTGGACAGAAGCTGAACATAGGTTGTTTCTTCAAGGCTTGGAGAACCATGGATGGGGTGACTGGCGAAGTATATCAAGGAACTGTGTGGTAACAAGAACACCTACACAGGTAGCAAGCCATGCTCAGAAATATAAAATTCGACAGAATtcaaaggagaagaagaaagaaagaaagcgATCCAGCATACATGATGTCACCCATGTAAATAAAGATGACATTTCAGCACCTCAAGGACCAATTACCGGTCAAGCAAGCGGTTCTGCAGCAAGTTCTTCTGAACAATCAGCCGAACAAGCTCCTACATCCCCACTTGCTGGAATTTATGCTGCTCCTAGGATCGAGCAACCTATTGAAGGACCTCTTGTATCTGCAGTTGGCACTCCAGTGAATCTTACTGCTGCTGGACAATCACCCGAACAAGCTCCTCCAACCCCATCTGCTGGAATTTATGCTGCTCCTAGGATCGAGCACCCTATTGGACGACACCTTCTGCACCTGTTGGAATCTATGCTGNATGCTGCTCCTAGGATCGAGCACCCTATTGGACAACCCCTTGTATCTGCAGTTGGCACTCCAGTGAATCTTTCTGCTGCTGGACAATCGGCCGAACAAGCTCCTGCAGCCGCACCTGCTGGAATTTATGCTGCTCCTAGGATCGAGCAGTCTATTGGAGGATCCCTTGTATCTGCATTTGGCACTCCAGTGAATCTTACTGCTGCTGGACACATGGCTTATGAACTTGGACCAGATTCTGGGACAGTTATGCCAGGGGAACCAATGAACTTGGGTCCTATGACATATCCCAGGCAATATACATATGCTCATTCATGA 1110 0.4396 MDELGSSSSYWSREQDKAFENALANHAEEWEQFASYVTGKSLEEIKRHYVDLIDDVNHIESGYVLIPDYNEIRAVKKGTETSRTVQERRKGIPWTEAEHRLFLQGLENHGWGDWRSISRNCVVTRTPTQVASHAQKYKIRQNSKEKKKERKRSSIHDVTHVNKDDISAPQGPITGQASGSAASSSEQSAEQAPTSPLAGIYAAPRIEQPIEGPLVSAVGTPVNLTAAGQSPEQAPPTPSAGIYAAPRIEHPIGRHLLHLLESMLXAAPRIEHPIGQPLVSAVGTPVNLSAAGQSAEQAPAAAPAGIYAAPRIEQSIGGSLVSAFGTPVNLTAAGHMAYELGPDSGTVMPGEPMNLGPMTYPRQYTYAHS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03216 369 SUPERFAMILY Homeodomain-like 9 59 IPR009057 -
Tsu04g03216 369 ProSiteProfiles SANT domain profile. 94 142 IPR017884 -
Tsu04g03216 369 Gene3D - 5 65 - -
Tsu04g03216 369 CDD SANT 11 49 IPR001005 -
Tsu04g03216 369 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Tsu04g03216 369 Gene3D - 92 143 - -
Tsu04g03216 369 MobiDBLite consensus disorder prediction 138 200 - -
Tsu04g03216 369 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Tsu04g03216 369 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Tsu04g03216 369 SUPERFAMILY Homeodomain-like 87 143 IPR009057 -
Tsu04g03216 369 MobiDBLite consensus disorder prediction 169 194 - -
Tsu04g03216 369 SMART sant 90 140 IPR001005 -
Tsu04g03216 369 SMART sant 7 55 IPR001005 -
Tsu04g03216 369 MobiDBLite consensus disorder prediction 148 163 - -
Tsu04g03216 369 PANTHER TRANSCRIPTION FACTOR KUA1 9 231 - -
Tsu04g03216 369 PANTHER TRANSCRIPTION FACTOR SRM1 294 362 - -
Tsu04g03216 369 PANTHER TRANSCRIPTION FACTOR SRM1 9 231 - -
Tsu04g03216 369 CDD SANT 93 138 IPR001005 -
Tsu04g03216 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Tsu04g03216 369 PANTHER TRANSCRIPTION FACTOR KUA1 294 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03216 Tsu-Chr4 40761099 40764453 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu04g03216 Myb_DNA-binding 4.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03216 - - cpap:110808612 262.307