Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03192 ATGCACTCATGTGCAGCGTGCAAGCATCTACGTCGAAGGTGCGACTCATCCTGCGAATTAGCTCCATTCTTTCCATTGGAAAACCCGCAACGTTTCAAAGTTGTACATGAAGTGTTCGGAAGGAGCAACGTGTCTAAGATGTTGCGGGAAATAGACCCTTCACAACGTGAAAACACAGTTGATTCGTTGGTCTATGAGGTCGAGGCTCATCTAAGGGACCCTTTTAATGGCTATTTGGATTATGTTCACAATCTTGAACATCAATTGAAGGAACTTCAAAAGGAAATGGATAATGTGAAGAGTGAACTGACCAAATACCCCAGTCGTGAGATCACTCAATATGTGATGAACTGA 354 0.4322 MHSCAACKHLRRRCDSSCELAPFFPLENPQRFKVVHEVFGRSNVSKMLREIDPSQRENTVDSLVYEVEAHLRDPFNGYLDYVHNLEHQLKELQKEMDNVKSELTKYPSREITQYVMN 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03192 117 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
Tsu04g03192 117 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 3 113 - -
Tsu04g03192 117 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
Tsu04g03192 117 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 113 - -
Tsu04g03192 117 Coils Coil 75 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03192 Tsu-Chr4 40125035 40125388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03192 4 106 AS2 family AT3G27650 49.515 1.63e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu04g03192 LOB 3.4e-33 No_clan