LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g03163	ATGGATAGTCTTGAATTTGATCGCAACAAATCCTCTCTGATGGAACGAGCTCTAGAAATACAAGCAAATTTAGCATCCAAGTTTCCCAGTTTTGTGAAGAATATGCTCCCATCATGTTGCTGGTGGATTTTGGCTGGTAAACAGTTGGTTACTTCAGGTCTTCCAAAAAACTTTTCTGAAATGCATTTACCAAAGAATGATATAACTGTTGTTCTTGTCGACGAAACTGAGCTTGAACATAAGACCAAGTACCTTGCTGAAAAGAATGGACTAAGTGGGGGATGGAGAGCGTTCTCCATAGCTCAtaaattgaaggaaaaagaTGATTTGGTGTTTTATTTGATCGAAGAATGGAAATTCAGTGTCTATATTGTGAAAGCGAGTGCCTTATCTGAAATTGATGGAGCTATTGGTCTTCTAAACTTGGGCGCTTGTGTAAGAAAGATGGATAGTGCCGAGATAATTCTGGCTCATATGATTTTGATGGCATCAGGTTTGCTCAATCAGTTATCGATTTCAAAGATTCAAAAGTCATACCTCCATGACCAACTTATCGATGGGCTGAACTTGCAATTAGTAGCAGGTCTCATttttgaaaccatcaacattgCTGATGCTATTAGATCTTCCAAGCCTAGCATTTGTGAAAATCTGAAAGCATGGGACAACACTTTCAAAGATTTTGGGCATGAAAGTTGGATTTTTCGTACCAGAATAGATAAGCTACTGACTCTCTCATCTGATTCAGAAGATGCTTTGAACCGCAAGATACTTGAAAAAGTGGAAGCAGAAGAAGAATTAAAAGCAGTTGAAATGAAGCGTAGTAGTGTTAAAGCGGTGATTGAAAATTCAGATTACGAGATTGAAGCTATGAAGAAGAAAGCTGAGAACCTTGAAGCTGAGTTTCTGGAAGAGTCAAAGGCACCATGGTAA	933	0.3741	MDSLEFDRNKSSLMERALEIQANLASKFPSFVKNMLPSCCWWILAGKQLVTSGLPKNFSEMHLPKNDITVVLVDETELEHKTKYLAEKNGLSGGWRAFSIAHKLKEKDDLVFYLIEEWKFSVYIVKASALSEIDGAIGLLNLGACVRKMDSAEIILAHMILMASGLLNQLSISKIQKSYLHDQLIDGLNLQLVAGLIFETINIADAIRSSKPSICENLKAWDNTFKDFGHESWIFRTRIDKLLTLSSDSEDALNRKILEKVEAEEELKAVEMKRSSVKAVIENSDYEIEAMKKKAENLEAEFLEESKAPW	310

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g03163	310	Coils	Coil	253	308	-	-
	Tsu04g03163	310	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	8	187	IPR044837	-
	Tsu04g03163	310	ProSiteProfiles	B3 DNA-binding domain profile.	54	128	IPR003340	GO:0003677
	Tsu04g03163	310	Pfam	B3 DNA binding domain	54	125	IPR003340	GO:0003677
	Tsu04g03163	310	Gene3D	-	10	129	IPR015300	-
	Tsu04g03163	310	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS01G0234100	8	187	-	-
	Tsu04g03163	310	CDD	B3_DNA	29	126	IPR003340	GO:0003677
	Tsu04g03163	310	SUPERFAMILY	DNA-binding pseudobarrel domain	26	128	IPR015300	-
	Tsu04g03163	310	SMART	B3_2	45	128	IPR003340	GO:0003677

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g03163	14	135	B3 DNA Binding Superfamily	AT3G19184	43.307	7.35e-27	105

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Tsu04g03163		B3	4.6e-08	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g03163	-		-	hbr:110644280	209.534

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