Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03163 ATGGATAGTCTTGAATTTGATCGCAACAAATCCTCTCTGATGGAACGAGCTCTAGAAATACAAGCAAATTTAGCATCCAAGTTTCCCAGTTTTGTGAAGAATATGCTCCCATCATGTTGCTGGTGGATTTTGGCTGGTAAACAGTTGGTTACTTCAGGTCTTCCAAAAAACTTTTCTGAAATGCATTTACCAAAGAATGATATAACTGTTGTTCTTGTCGACGAAACTGAGCTTGAACATAAGACCAAGTACCTTGCTGAAAAGAATGGACTAAGTGGGGGATGGAGAGCGTTCTCCATAGCTCAtaaattgaaggaaaaagaTGATTTGGTGTTTTATTTGATCGAAGAATGGAAATTCAGTGTCTATATTGTGAAAGCGAGTGCCTTATCTGAAATTGATGGAGCTATTGGTCTTCTAAACTTGGGCGCTTGTGTAAGAAAGATGGATAGTGCCGAGATAATTCTGGCTCATATGATTTTGATGGCATCAGGTTTGCTCAATCAGTTATCGATTTCAAAGATTCAAAAGTCATACCTCCATGACCAACTTATCGATGGGCTGAACTTGCAATTAGTAGCAGGTCTCATttttgaaaccatcaacattgCTGATGCTATTAGATCTTCCAAGCCTAGCATTTGTGAAAATCTGAAAGCATGGGACAACACTTTCAAAGATTTTGGGCATGAAAGTTGGATTTTTCGTACCAGAATAGATAAGCTACTGACTCTCTCATCTGATTCAGAAGATGCTTTGAACCGCAAGATACTTGAAAAAGTGGAAGCAGAAGAAGAATTAAAAGCAGTTGAAATGAAGCGTAGTAGTGTTAAAGCGGTGATTGAAAATTCAGATTACGAGATTGAAGCTATGAAGAAGAAAGCTGAGAACCTTGAAGCTGAGTTTCTGGAAGAGTCAAAGGCACCATGGTAA 933 0.3741 MDSLEFDRNKSSLMERALEIQANLASKFPSFVKNMLPSCCWWILAGKQLVTSGLPKNFSEMHLPKNDITVVLVDETELEHKTKYLAEKNGLSGGWRAFSIAHKLKEKDDLVFYLIEEWKFSVYIVKASALSEIDGAIGLLNLGACVRKMDSAEIILAHMILMASGLLNQLSISKIQKSYLHDQLIDGLNLQLVAGLIFETINIADAIRSSKPSICENLKAWDNTFKDFGHESWIFRTRIDKLLTLSSDSEDALNRKILEKVEAEEELKAVEMKRSSVKAVIENSDYEIEAMKKKAENLEAEFLEESKAPW 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03163 310 Coils Coil 253 308 - -
Tsu04g03163 310 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 8 187 IPR044837 -
Tsu04g03163 310 ProSiteProfiles B3 DNA-binding domain profile. 54 128 IPR003340 GO:0003677
Tsu04g03163 310 Pfam B3 DNA binding domain 54 125 IPR003340 GO:0003677
Tsu04g03163 310 Gene3D - 10 129 IPR015300 -
Tsu04g03163 310 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 8 187 - -
Tsu04g03163 310 CDD B3_DNA 29 126 IPR003340 GO:0003677
Tsu04g03163 310 SUPERFAMILY DNA-binding pseudobarrel domain 26 128 IPR015300 -
Tsu04g03163 310 SMART B3_2 45 128 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03163 14 135 B3 DNA Binding Superfamily AT3G19184 43.307 7.35e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu04g03163 B3 4.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03163 - - hbr:110644280 209.534