Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03140 ATGGCACAAGAAAGCTTTGGAGATGATTCACAAGAAAAACATCTTGATCGTTTAAAAGAGCAAGTTCGCTTGGTTAAAAGAAAAGATTGCGAACGCTACGAGATTGCTCCAATCCAAAGCAAACTATCATTTGAGAATGGTTTTTTTATAGTGTTCCATGCATGCCAACTGTTGATCCAGAAAAATGATGGAATGATATTGATAGGGGTGGGGGGTCCTTCAGGGGCCGGGAAGACTGTGTTTTCCGAAAAGATATTCAACTCCATGCCTGAAGTTGCCGTTATTTCAATGGACAATTACAATGATTCTAGTCGAATTGTCGATGGAAACTTCGATGCAGATCCTCGCCTAACAGACTACGAAACATTGCTCCGAAATGTACATGACTTAAAGGCAGGAAAGCCGGTTGAAGTTCCTGTGTATGATTTCAAATCCAGTTCACGTACAGGATACAGGACGGTTGAAGTGCCGAGCTCTCGCATTGTGATTATAGAGGGCATTTATGCTTTGAGTGAGAGATTGCGACCTCTACTAGACCTTCGAGTATCTGTAACAGGTGGTGTTCATCTTGACCTTGTTAAACGAGTTATACGTGATATACAACGTGCTGGTCAAGAACCTCAAGAAATTATTCATCAAATATCTGAGACGGTATATCCAATGTACAAGGCTTATATTGAGCCAGATCTCCAAACAGCACACGTAAAAATAACCAACAAGTTTAATCCATTTTTTGGATTCCAAAGCCCTACTTACATATTAAAGTCAACCAGGAATGTAACAGTGGATCAAATTAAAGCCATTATCTCCCAAGATTTTGAGGAAACAACTGAGCAAACTTATGACATATATCTTCTACCTCCCGGTGAAGATCCGGAGAGCTGTCAATCATATTTACGGATGCGCAATAAGGATGGGAAATACAGTCTCATGTTTGAGGAATGGGTGACTGATGATCCATTTGTCATATCACCAAGAATTACTTTCGCGGTCAGTGTGCGTCTTCTTGGAGGACTAATGGCCCTTGGATACACGATAGcaactatcctaaaaagaagCAGTCATGTCTTATCTGATGATAGGGTTTGTGTTAAACTTGATTGGCTTGAGCAACTAAATCGTCATTATGTTCAGGTACAGGGAAAAGATCGATTAGTTGTAACATACATAGCACAGCAATTGGATTTGGAAGGTTCGTACGTTCCCCGTACCTACATTGAGCAGATTCAACTTGAAAAGCTTGTAATGGCCATGCCAGATGAATTAAAGACTAAGCTCAACCTTAATGAGGATTTGTTAACAAGTCCCAAAGCCGCATTTTTTAGAACCTCTAATGACGGGGCTCCCGTGAGACATAAGCGTATAAGAAGTGATACATCACATTCAAGTACAAATCAAAAAGATGAGATTGAATCAAAAGTTACTGAATTCATTTCGAACAACCGGGGACTTCAAGAATATaataattcagattctgaaacaAAACAGGAAAATCAGGGTGCCATTACTCAGCTGTCAGAACAAATTTCATCCCTGCATGATAGAATGGGCGAGTTTACAAATCGTATTGAAGAGCTGAATTCAAAGTTAACCATCAAAGAAAACTCTCCAAGCCAACAAAAGATGGACCTGCAAGCTGAGTCCTATGATGGTTCTGTTCCCACCTCTTGCCTCATTACTAGTTTGAGTAATGGTTCCCTAAATGGATCTATTATGTCAAATCCCTCATTGCCATCACAATTAGCTAAGGAGGAGTCACCTTTAAGAGATGAGGTATGTGTCTTTTCAGATTCTActctatga 1803 0.3916 MAQESFGDDSQEKHLDRLKEQVRLVKRKDCERYEIAPIQSKLSFENGFFIVFHACQLLIQKNDGMILIGVGGPSGAGKTVFSEKIFNSMPEVAVISMDNYNDSSRIVDGNFDADPRLTDYETLLRNVHDLKAGKPVEVPVYDFKSSSRTGYRTVEVPSSRIVIIEGIYALSERLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPQEIIHQISETVYPMYKAYIEPDLQTAHVKITNKFNPFFGFQSPTYILKSTRNVTVDQIKAIISQDFEETTEQTYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDDPFVISPRITFAVSVRLLGGLMALGYTIATILKRSSHVLSDDRVCVKLDWLEQLNRHYVQVQGKDRLVVTYIAQQLDLEGSYVPRTYIEQIQLEKLVMAMPDELKTKLNLNEDLLTSPKAAFFRTSNDGAPVRHKRIRSDTSHSSTNQKDEIESKVTEFISNNRGLQEYNNSDSETKQENQGAITQLSEQISSLHDRMGEFTNRIEELNSKLTIKENSPSQQKMDLQAESYDGSVPTSCLITSLSNGSLNGSIMSNPSLPSQLAKEESPLRDEVCVFSDSTL 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03140 600 CDD UMPK_like 67 240 - -
Tsu04g03140 600 MobiDBLite consensus disorder prediction 450 471 - -
Tsu04g03140 600 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 6 595 - -
Tsu04g03140 600 PANTHER URIDINE KINASE 6 595 - -
Tsu04g03140 600 Pfam Phosphoribulokinase / Uridine kinase family 67 237 IPR006083 GO:0005524|GO:0016301
Tsu04g03140 600 Pfam CYTH domain 271 405 IPR023577 -
Tsu04g03140 600 Gene3D - 65 278 IPR027417 -
Tsu04g03140 600 PRINTS Uridine kinase signature 225 238 - -
Tsu04g03140 600 PRINTS Uridine kinase signature 189 199 - -
Tsu04g03140 600 PRINTS Uridine kinase signature 133 148 - -
Tsu04g03140 600 PRINTS Uridine kinase signature 65 82 - -
Tsu04g03140 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 239 IPR027417 -
Tsu04g03140 600 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Tsu04g03140 600 Coils Coil 509 529 - -
Tsu04g03140 600 SUPERFAMILY CYTH-like phosphatases 263 408 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03140 Tsu-Chr4 39102516 39107256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03140 66 237 PRT Gene Family AT5G40870 28.729 1.53e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03140 K00876 - gmx:100781286 889.797