Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03127 ATGAGGGGTGGAAATAGGAAGCTGCATTTAAGCAAGATCTATTCATTCACATGTTTTAAAGCGAGTGCGGTTGATGGAGATCATTCACAGATTGGAGGTAAAGGTTATTCGAGGGTGGTTTTCTGCAATGAACAAGATAGTAGTGCTGCTGCTGCTACGACTACTGCTACTACCGAGGAACCTGTGATTAGGAATTTTGCAGATAATTCTGTTAGATCTACAAAATATACTGCTGCTACTTTCCTTCCAAAATCACTTTTCGAACAGTTTAGGAGAGTTgctaatttctattttttggttACTGGTGTTTTGGCTTTCACTCCACTTGCTCCTTATAGAGCTGTTACTGCTATTCTTCCTCTTGTTGTTGTTATTGGAGCATCTATTGTGAAAGAAGGTATCGAAGATTGGCGTAGGAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGTTAAAGTTCATAAAGTTGATGGCATTTTTGAATATACTGCATGGAAGAATCTGAGGGTAGGGAACATAGTGAAGGTAGAGAAGAACGAGTTCTTCCCGGCTGACCTTGTATTGCTTTCATCCAGTTATGAGGATGCAGTCTGCTACGTTGAGACGATGAACTTGGATGGAGAGACAAATTTGAAGTTAAAACAAGGTTTAGAGGTAACTTCTTTCTTACATGATGATCTcaacttcaaaaaatttaaagctACCGTCAAATGCGAAGATCCAAATGCAAATTTGTATTCGTTTGTTGGAAGCATGGAGTTTGAAGAGCAAAAGTATCCCCTTTCTTCTCAGCAACTTCTCCTGCGAGACTCTAAACTTCGTAATACAGACTATATTTTCGGAGCTGTTATCTTCACTGGCCATGACACTAAGGTTATTCAGAATTCTACCGACCCACCTTCGAAAAGAAGCCGAGTTGAAAGGAAGATGGATAGAGTCATCTACTtcttgttttgtattttgtttctaATGGCATCTGTAGGATCTATTTTCTTCGGCTTTATAACTAAAAACGACTTGCAACGTGGTTCAGTGAAAAGATGGTATTTAAGGCCTGATGATTCGACAATTTTCTTTGATCCGAAAAGATCGGCTGCTGCTGCTGCAAATCATTGTTTGACTGCATTAATGTTATATGGCTTCTTTATTCCGATCTCTTTGTACGTGTCAATAGAAATGGTCAAAGTCCTTCAGAGCATTTTCATCAATCAAGATATTCATATGTACTACAAGGAAGCAGACAAACCAGCACATGCTCGCACTTCAAACTTGAACGAGGAGCTTGGTCAAGTTGACACAATACTTTCTGATAAAACTGGAACTTTGACCTGCAACTCAATGGAATTCATTAAATGTTCGATCGCTGGTGTAGCTTATGGCCGTGGTGTTACGGAGGTTGAGAAGACCATGAGTAGAAGAAAAAGTTCAACGTTAGTTCGTGAGCGTGATATATCAGAAGAAGATGACATCAGGGGTTCTCTTGATAAAAAAGCTGCCATAAAAGGTTTTAACTTTACCGATGAAAGAATAATGGACGGTAATTGGGTTAATGAGCCTCATGCAGATGTTATCGAGAAGTTTTTTCGCCTATTGGCAGTATGTCATACAGCCATACCAGAAGTAGATAAAGACACTGGAAATGTGTCGTACGAGGCCGAATCTCCTGATGAAGCTGCATTTGTTATTGCAGCAAGAGAACTTGGTTTTGAGTTCTACAAAAGGGCTCAGACTAGTTTATCAACATACGAGTTGGATCCAGTTTCAGGCAATAAAGTTGAAAGGATGTACAAGATTCTCAATGTTTTAGAATTCAATAGCTCAAGGAAGAGAATGTCGGTAATAGTAAAAGGCAATGACGGAAAAATTCTACTACTCTGCAAAGGTGCCGACAGTGTCATGTTTGAAAGACTTGCCAAGAATGGTAGGGAGTTTGAAGAAAAAACCATGGAACATGTGCATGAATACGCTGATGCAGGTCTAAGAACCCTTATACTCGCCTATCGTGAACTTGAAGCAGAAGAATACAAGGATTTTGCAAACAAATTCTCTGAGGCCAAGAATTTAATTAGTGGGAACCGGGAAAGACTGATTGAGGAAGTGTCAGATAATATTGAGAAGAATCTAATCCTTCTAGGTGCCACTGCTGTTGAGGACAAGCTCCAAAATGGGgttCCTGATTGCATTGACAAGCTTGCTCAAGCAGGAATTAAGATTTGGGTTTTGACTGGCGATAAAATGGAGACTGCAATCAATATTGGCTTCGCTTGTAGTTTGCTTAGACAAGGAATGAAACAGATTATAATTCATTTGGATACTCCAGAAATCCAAGCACTGGAGAAGGATGGGGACAAGATAGCTATTACCAAGACATCAAGGCAGAGTGTCCTCTTTCAGATACATGAAGGTGCTGCACAGCTTACTGCACACAGAGGGAGCTCTCAGCAAGCATTTGCTCTAATCATTGATGGCAAATCACTTGCTTATGCACTTGAGGATGATATGAAGAACATGTTTCTTGATCTTGCAATTCGTTGTGCATCTGTTATTTGCTGTCGCTCATCACCAAAGCAGAAGGCGCTGGTGACTAGATTGGTCAAATCTGGAACCGGAAAAACAACATTAGCTATCGGTGATGGAGCTAATGATGTGGGAATGCTTCAAGAAGCTGATATTGGGGTTGGTATAAGTGGTGTTGAAGGAATGCAGGCTGTTATGTCTAGTGATATTGCAATTGCACAATTCCGATATTTAGAACGATTACTTCTCGTGCATGGCCATTGGTGTTACCGAAGGATCTCATCAATGATATGCTATTTTTTCTACAAGAATGTCACATTTGGTTTCACGCTATTCTTGTATGAGGTGTATGCATCATTCTCTGGAGAACCTGCATACAATGACTGGTTTTTAGCTCTCTATAATGTCTTCTTTTCATCACTTCCTGTGATCGCTCTCGGTGTATTCGACCAGGACGTATCTGCTCGGTACTGTCTCAAGTTTCCTTTGTTATATCAAGAAGGAGTACAAAATATCCTTTTCAGCTGGCGTCGAGTACTCAGTTGGATGCTTAACGGATTCTTTAGCGCCTTactaattttcttcttctgcaCCAAAGCGATGGAGCTACAAGCCTTCGATTCGGAGGGAAGAACTGCTGGAAGAGAAATTCTAGGAGCAACCATGTACACTTGTGTAGTTTGGGTTGTAAACTTGCAAATGGCACTATCTATAAGTTACTTCACCTTGATCCAACATATTTTCATCTGGGGTTCCATTTTTATCTGGTACATTTTTCTCCTAATATATGGAGCAGTGCCTCAAAAGATTTCGGAAAACGCTTACAAAGTCTTCATTGAATCTCTTGCTCCTTCGCCTTCCTATTGGATAGTAACATTATTTGTGGTGATCTCAACCCTTATACCATACTTCTCATACAATGCAATTCAGATGCGGTTCTTTCCGATGTATCACGAAATGGTACAGTGGATAAGGTACGAAGGGAAGACTGAGGATCCTGAGTACTGTAATATGGTGCAGCAAAGATCGTTGCAGCCAACGACTGTCGGTTCAACTGCTCGCTTAGCTGCCAAGGCAAACCAATCGttagacaaaaatattaaacgtagataa 3630 0.3948 MRGGNRKLHLSKIYSFTCFKASAVDGDHSQIGGKGYSRVVFCNEQDSSAAAATTTATTEEPVIRNFADNSVRSTKYTAATFLPKSLFEQFRRVANFYFLVTGVLAFTPLAPYRAVTAILPLVVVIGASIVKEGIEDWRRKKQDIEVNNRRVKVHKVDGIFEYTAWKNLRVGNIVKVEKNEFFPADLVLLSSSYEDAVCYVETMNLDGETNLKLKQGLEVTSFLHDDLNFKKFKATVKCEDPNANLYSFVGSMEFEEQKYPLSSQQLLLRDSKLRNTDYIFGAVIFTGHDTKVIQNSTDPPSKRSRVERKMDRVIYFLFCILFLMASVGSIFFGFITKNDLQRGSVKRWYLRPDDSTIFFDPKRSAAAAANHCLTALMLYGFFIPISLYVSIEMVKVLQSIFINQDIHMYYKEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVEKTMSRRKSSTLVRERDISEEDDIRGSLDKKAAIKGFNFTDERIMDGNWVNEPHADVIEKFFRLLAVCHTAIPEVDKDTGNVSYEAESPDEAAFVIAARELGFEFYKRAQTSLSTYELDPVSGNKVERMYKILNVLEFNSSRKRMSVIVKGNDGKILLLCKGADSVMFERLAKNGREFEEKTMEHVHEYADAGLRTLILAYRELEAEEYKDFANKFSEAKNLISGNRERLIEEVSDNIEKNLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIIHLDTPEIQALEKDGDKIAITKTSRQSVLFQIHEGAAQLTAHRGSSQQAFALIIDGKSLAYALEDDMKNMFLDLAIRCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNVTFGFTLFLYEVYASFSGEPAYNDWFLALYNVFFSSLPVIALGVFDQDVSARYCLKFPLLYQEGVQNILFSWRRVLSWMLNGFFSALLIFFFCTKAMELQAFDSEGRTAGREILGATMYTCVVWVVNLQMALSISYFTLIQHIFIWGSIFIWYIFLLIYGAVPQKISENAYKVFIESLAPSPSYWIVTLFVVISTLIPYFSYNAIQMRFFPMYHEMVQWIRYEGKTEDPEYCNMVQQRSLQPTTVGSTARLAAKANQSLDKNIKRR 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03127 1209 Pfam Cation transport ATPase (P-type) 543 637 - -
Tsu04g03127 1209 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 66 1161 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Tsu04g03127 1209 CDD P-type_ATPase_APLT_Dnf-like 68 1036 - -
Tsu04g03127 1209 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1204 - -
Tsu04g03127 1209 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 847 958 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g03127 1209 Pfam Phospholipid-translocating P-type ATPase C-terminal 904 1154 IPR032630 -
Tsu04g03127 1209 Gene3D - 712 916 IPR023214 -
Tsu04g03127 1209 SFLD p-type atpase 417 927 IPR044492 -
Tsu04g03127 1209 Gene3D - 557 711 IPR023299 GO:0000166
Tsu04g03127 1209 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1204 - -
Tsu04g03127 1209 SUPERFAMILY Calcium ATPase, transmembrane domain M 64 1154 IPR023298 -
Tsu04g03127 1209 Gene3D - 130 297 - -
Tsu04g03127 1209 PRINTS P-type cation-transporting ATPase superfamily signature 435 449 - -
Tsu04g03127 1209 PRINTS P-type cation-transporting ATPase superfamily signature 876 895 - -
Tsu04g03127 1209 Pfam Phospholipid-translocating ATPase N-terminal 59 118 IPR032631 -
Tsu04g03127 1209 SUPERFAMILY HAD-like 430 931 IPR036412 -
Tsu04g03127 1209 SFLD Haloacid Dehalogenase 417 927 - -
Tsu04g03127 1209 ProSitePatterns E1-E2 ATPases phosphorylation site. 437 443 IPR018303 -
Tsu04g03127 1209 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 510 712 IPR023299 GO:0000166
Tsu04g03127 1209 SUPERFAMILY Calcium ATPase, transduction domain A 152 294 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03127 Tsu-Chr4 38915339 38922720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03127 1 1197 Primary Pumps ATPases AT1G68710 73.236 0.0 1890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03127 K01530 - gmx:100781421 2040