Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03123 ATGCAGACTGAGGCTGAAATCTTGACTGATTTGAGTACTCAACTTCATTCGGAGACCGTTGTTTCTGTTCAAAACGAGGATCCTGGTGTTTCTACATCTCTTGCAAATACTGTCATCTTGCCTCAGCAGCCAGctCCGAAGAAACCAACACGGCAATGGGCTGCTTGGACTCGTCAAGAAGAGGAAAGCTTCTTCACCGCATTACGACAAGTTGGGAAGAATTTTGAGAAAATCACTTCCCGTGTACAAAGTAAAAACAAGGATCAGGTTAGGCATTATTACTATCGGCTTGTGAGACGGATGAACAAACTTCTCGGTCCAGAATTATGTCTGGATGccaaaaattcaaaagataCCAATGCTGCAATGCTTCGTTGGTGGTCTTTATTGGAAAAGTATAGATTTAAAGCCTCAAAGCTTCACCTAAAGCCCCGAcggtttaaaatatttttagaagcCTTGGAGCACCAACTTTTGAAGGACCGGAAGAAGAATGTAAGGAAGCGGCCTTTGCAGGGTGGAAATTGTCAACCTCCTGCTCTTAATACTGTCTCAAATCAAGCTAGAGCATCAGGAAATGATACCCGTGCAGTTAAAATGATTCTTGTTGAGagtcaaaatattataaaactTGGACCTTCAAAACCACCATTGAAACGCAATGTGAGCATGGGTGTTAACCGTAATAATGCTAAGGGAGATTCAAATAACTCAAAACCTACGAGGCAGAGAAAGAAATCTGGTATGGCCACAGCAGCTGCATATAAAAAATGGGAGAAGGCTGCAATTGCTGGCGTCTCTTTAGTTGCAGATGCTGCTGAGCATTTGGAGCGATCTGCCACTGTTAAAGAGGTTGAACATGACCAGGAGAATCCAGGGGAAAACTGTTCTGATCCTGTTGATCATGTCCTGCCCTCTTTACCAACACTTCCACAAAATCACTTTGTTGATCACAATGTGCAGAATATTGTGAAACTTAAGCTCCAATTATTCCCAATTGATGAACCCACTCGAAGAGCCTTGGAAATGGATAAACATAATCCATACTTGGAGCTTACGCTTAGTACACGGAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGCAATACAAGAATAGCAGTTGGAGAGTTGATGCTTTTTCCTTATGGTGTTCAAAAGGAAAACTTCAATACTTATCAAAGATGGAATCAGGAGTCTACTCTTAGTGCGGCGGATATATATGCAGCGATAGGAAGTCCACCTTTATTCCGTTTGAGGTATGGTTGGTTCTCTAATACTGAGCACGGGACATTAAATATGCAAGCACCTGTAACATCCAGCTGCATGGTTAGACAATCCAAAAATGGTGGTGATACTATGAAGGATCAGATTGTGAATTCAGCATCACTTCCTAAGCCATCAACTAATAATTACTCCATGGAGCGCTCTGTAGATTGTGGAACATCCATGAACATAAACGGCGTTCTTACTTCTACTTCAACCTATTTACCCAACACTAGAGATGGCAGTATCTACCAGAATACAAGCACTGAGGAACCTTGTGGACCTACAGCCCATACATCATTGCATGGAAAAGATGTTACAAATGGAGCTATAACTAGACAGTTGGAAGACATGGATGGGTTGAAATCAAACTGTGGATCAGGCCTGTCAGCTGTTGAGTGGGCCGACAGCCTTACCAACATTAGTGTGGGGGACCTACTTTCAGGAGTCTCCCAGGATCTCAATTATAACTGCATGGATCCTCTTATTGCTGAGAGTTGTCGCAGTGCTCATCAAATTCCTTTTACTAGTGATTCTTTTGATGCTGCTATTGCCGCTCACATATCTAGACACCAAGACAAGATGGGACAATCAACTCTGGCATCTCATATGTCGTCCATCTGGGATGCTGAAGAAACATGTGATGCTTTCTCATTTAAAAAGGATCCTATTCGTCATGATGATGGTCCTTGTTTATCTCTCACTGCTTCTTTAGATTTTGATAAAAAGGTTCCGGAAAGAAGCTTTGAGAATTTGAATAAGCTTTCACTTGAAAAAGAGAGCCTTGTGGATGATGTTGCTCAAACAGACCCTATGCCTATGGACAATTGTGAGTCCGGCGCAGATATCAAGTATAATTTAGCAAAGGATTTTAATGGGCTAGCAGATATGTATTGGCCGGATTCTTTGGGACCGCTGGATTTGGAAATACCATCTAATAAGTACCACAGTGATGATCCAATTTTAAGTGATAGTGGACTGAATCGCTTGATAGCCAACAGCCTGGATGCATTCCAGAATTGCTCCTTTTTTGGGATTGACAAGAAGGAAACACCATCAACAGTTGAGGCTCAAAAAACTGCCACTCtttcagtttttaaaattggaagTGGTATTTGA 2394 0.4073 MQTEAEILTDLSTQLHSETVVSVQNEDPGVSTSLANTVILPQQPAPKKPTRQWAAWTRQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNKLLGPELCLDAKNSKDTNAAMLRWWSLLEKYRFKASKLHLKPRRFKIFLEALEHQLLKDRKKNVRKRPLQGGNCQPPALNTVSNQARASGNDTRAVKMILVESQNIIKLGPSKPPLKRNVSMGVNRNNAKGDSNNSKPTRQRKKSGMATAAAYKKWEKAAIAGVSLVADAAEHLERSATVKEVEHDQENPGENCSDPVDHVLPSLPTLPQNHFVDHNVQNIVKLKLQLFPIDEPTRRALEMDKHNPYLELTLSTRKKISSILEHLNRKWGNTRIAVGELMLFPYGVQKENFNTYQRWNQESTLSAADIYAAIGSPPLFRLRYGWFSNTEHGTLNMQAPVTSSCMVRQSKNGGDTMKDQIVNSASLPKPSTNNYSMERSVDCGTSMNINGVLTSTSTYLPNTRDGSIYQNTSTEEPCGPTAHTSLHGKDVTNGAITRQLEDMDGLKSNCGSGLSAVEWADSLTNISVGDLLSGVSQDLNYNCMDPLIAESCRSAHQIPFTSDSFDAAIAAHISRHQDKMGQSTLASHMSSIWDAEETCDAFSFKKDPIRHDDGPCLSLTASLDFDKKVPERSFENLNKLSLEKESLVDDVAQTDPMPMDNCESGADIKYNLAKDFNGLADMYWPDSLGPLDLEIPSNKYHSDDPILSDSGLNRLIANSLDAFQNCSFFGIDKKETPSTVEAQKTATLSVFKIGSGI 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03123 797 ProSiteProfiles Myb-like domain profile. 48 98 IPR001005 -
Tsu04g03123 797 PANTHER CRAMPED PROTEIN 43 762 - -
Tsu04g03123 797 CDD SANT 55 98 IPR001005 -
Tsu04g03123 797 MobiDBLite consensus disorder prediction 223 245 - -
Tsu04g03123 797 MobiDBLite consensus disorder prediction 176 192 - -
Tsu04g03123 797 SMART sant 52 100 IPR001005 -
Tsu04g03123 797 SUPERFAMILY Homeodomain-like 48 102 IPR009057 -
Tsu04g03123 797 MobiDBLite consensus disorder prediction 165 192 - -
Tsu04g03123 797 MobiDBLite consensus disorder prediction 212 250 - -
Tsu04g03123 797 Gene3D - 2 105 - -
Tsu04g03123 797 ProSiteProfiles SANT domain profile. 56 102 IPR017884 -
Tsu04g03123 797 Pfam Myb-like DNA-binding domain 55 97 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03123 Tsu-Chr4 38860093 38865465 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu04g03123 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03123 - - aprc:113857455 1234.94