Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03119 ATGGCTAATAAGGTGATCCAGCTAGTAAGGATGTCAAATCTAACTGTGAAAGACCAAATAAATTCACGCGAGGTGATGAGGAGAACCAGAATGGTTTACGATTCACTTCGCATTTTAGCGAGTATTGAGGAGGAGAAGAGGGTTGCTGAAGAAAAGAGAAAGGCTATTGAAGTTGCGGTTGTGGAGGAGGAGAGGAGACTGATAGAGCAGACAAGGCTGACGGAAGACATAAGTTTGGTTGTTGAGGTTACGGTGATGGAGGCTGGGATGAGAGTAGGTGAAGAAATGAGTGTGGGGGGAGCTGCAAGGGATGGTGTTGGaacacaaaaaagaagaaggagtCGCATTCGAAACCGCATTCGTGGTGAAATAAAGGCAGCGAAATTAATGAGTGAGCATAAGTTGTGGTTGTATCGTGATAAGCGAATAGTTGGACCAATACCCGGGGTTTATGTTGGTGATTTGTTTCTTTATAGGATCGAATTGTGTGTGGTTGGTTTGCATATGCAGATACAAGCTGGCATTGATTATTTACGTAAGAATAAGTCTCCCAATGGTGAGCCAATTGCCACTAGTGTGATTGTCTCCGGTGGTTATGAGGATAATATGGAATTGGATAACGGTGATGTCATAATCTACACTGGCCATGGAGGACAGAAGAAGAATTCCTCTAAGCAAATTTGTGATCAGAAATTGGTGGGAGGAAACCTTGCTTTGGAAAGGAGTATGCATTATGGCATTGAGGTTAGGGTGATTCGTGGGATGAAGTATAAAGGGAGTGTGTCTGGTTCTGGTATGGTATATATTTATGACGGAATATATAGGATTGTTGATTGCTGGTTTGATGTTGGAAAGTCTGGCTTTGGAGTTTATAAGTATAAGCTTTTGAGAATGGAAGGGCAAGCTAAGTTGGGTAGTGCTATTCTTAAAGAAGCTAGAGATATTAAGAAAAGTGGGTTGGATTTTAAGCCTATGTATTGTCTTTCTGTTGATATTTCTAACAATATGGAGAGTGTTCCTGTTAGGATTTTTAATGACATCGATGACAATCAAGAACCTCTTAATTATGAGTATCTTCGAAATACTTGTTTTCCATGGTTTGTGTTTCGTCAGAGTGGGAACGCTATTGGTTGCAAGTGTGTGGAAGCTTGTACTGATGGTTGCTTTTGCTCTatgaagaatggaggagagttTCCTTATAATCTACAGGGTTTGCTTGTGAGAGGGAAGCCTTTGATTTTTGAATGTGGCCAATTTTGTTCATGTCCTCCCAATTGTCGAAATCGTGTTGCACAAAAGGGGCTCAAATATAGGTTGGAAGTGTTTAGGTCTACTCAGATGAGTTGGGGAGTTAGGTCCCTGGACCTTATTCAGGCCGGAGCTTTTATCTGTGAGTATGCAGGGGTTGTTTTGACTCCGGAGCAGGCACAAATTTTAACAATGAATGGCGACTCGTTGATATATCCTAATCAGTTCTCAGATAGATGGGCAGAATGGGGTAATTTATCTAAGATATACACTAATTATGAGCGTCCATCGTATCCATCAATTACCCCATTAAATATTTCTCTGGATGTGTCAAAATTGAGAAATGTTGCTTGCTATATGAGTCATAGTTCGAGTCCAAATGTATTTGTTCAATATGTTATGTATGATAACAATTTGATGATCCCTCACATTATGCTATATGCATCGGAGAATATCCCTCCAATGAGAGAGTTGAGCATTGATTATGGCATACCAGATGCGTTGACCGGAAAACTCGCCATATGGGGTAAGAATCCTAATTCTATCAATTATCCTTTTTTCGCATTATCTTTTaactatcttttttatttggaagTTTGTGATGTCTTGAATGTGTAA 1866 0.3901 MANKVIQLVRMSNLTVKDQINSREVMRRTRMVYDSLRILASIEEEKRVAEEKRKAIEVAVVEEERRLIEQTRLTEDISLVVEVTVMEAGMRVGEEMSVGGAARDGVGTQKRRRSRIRNRIRGEIKAAKLMSEHKLWLYRDKRIVGPIPGVYVGDLFLYRIELCVVGLHMQIQAGIDYLRKNKSPNGEPIATSVIVSGGYEDNMELDNGDVIIYTGHGGQKKNSSKQICDQKLVGGNLALERSMHYGIEVRVIRGMKYKGSVSGSGMVYIYDGIYRIVDCWFDVGKSGFGVYKYKLLRMEGQAKLGSAILKEARDIKKSGLDFKPMYCLSVDISNNMESVPVRIFNDIDDNQEPLNYEYLRNTCFPWFVFRQSGNAIGCKCVEACTDGCFCSMKNGGEFPYNLQGLLVRGKPLIFECGQFCSCPPNCRNRVAQKGLKYRLEVFRSTQMSWGVRSLDLIQAGAFICEYAGVVLTPEQAQILTMNGDSLIYPNQFSDRWAEWGNLSKIYTNYERPSYPSITPLNISLDVSKLRNVACYMSHSSSPNVFVQYVMYDNNLMIPHIMLYASENIPPMRELSIDYGIPDALTGKLAIWGKNPNSINYPFFALSFNYLFYLEVCDVLNV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03119 621 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 3 589 - -
Tsu04g03119 621 Pfam Pre-SET motif 332 429 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu04g03119 621 ProSiteProfiles YDG domain profile. 145 297 IPR003105 -
Tsu04g03119 621 SMART preset_2 329 421 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu04g03119 621 SMART G9a_1 140 301 IPR003105 -
Tsu04g03119 621 ProSiteProfiles SET domain profile. 437 579 IPR001214 GO:0005515
Tsu04g03119 621 Pfam SAD/SRA domain 144 301 IPR003105 -
Tsu04g03119 621 SMART set_7 437 585 IPR001214 GO:0005515
Tsu04g03119 621 Coils Coil 39 66 - -
Tsu04g03119 621 SUPERFAMILY SET domain 322 580 IPR046341 -
Tsu04g03119 621 ProSiteProfiles Pre-SET domain profile. 376 434 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu04g03119 621 Gene3D SET domain 306 589 IPR046341 -
Tsu04g03119 621 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 6 610 IPR025794 GO:0016571
Tsu04g03119 621 SUPERFAMILY PUA domain-like 126 309 IPR015947 -
Tsu04g03119 621 Pfam SET domain 449 579 IPR001214 GO:0005515
Tsu04g03119 621 Gene3D - 142 305 IPR036987 -
Tsu04g03119 621 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 3 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03119 Tsu-Chr4 38816397 38818262 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03119 110 580 Su(var)3-9 homologs AT1G73100 39.917 5.32e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu04g03119 SAD_SRA 4.9e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03119 K11420 - aip:107626851 771.541