Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03117 ATGGATTCTTTCTTAACCCTTGAAACCCCTTCTCCATCTCCTACACCTTCTCATCAAATCCCTAATATTAATGTTCCTAATTTTACATTTTCTCATCAAATCCCTAATATTTTACCCCCAAATTCAACCACTTTCATTTCACCCCCAAATTCATCAACCACCTTCATTTCACCACCAACCACCACCATTTCCACCGGACAACCGCTTCAGACATTACTTGTTCCAAAGCCGGAACCTTTTGATGAATTCCTCGCTACCCAAGATACTCAACAACAACCCTTTTACTCTCCTGGTTCTGGAGGACGAAATGAACAATCTGAGTTATACAGTGAATTCTACCGTGTTTCTGAGCTATTCAATTCTACTTTCGGTAAATCTTTTTACCCTTTTCTCCAAATCGATGATTCCAACAATGTTGATAATAATATGGTCAACGTTTGTAACCCTGACCTAAATCTGAACCCTAATCATGTTGTAGATTCTGTTGATTCTCAGTCTTTTGAGATTGAGGAGAATAATGATAGAGCTCTTGTTGTTGTGCCGGAGCAGCGACAAGAATCGAGTTCACAGGTTGCTGTTGTTAGAAAGAGGGCTAATCAGGTTATGGAGCTTGTGAGGGTATCGGATCTGAGTGTTAAGGATCAGATAAATTTGAGGGAGTTGATGCGGAAGACGAGAATGGTTTATGATTCGTTGCGTGTGTTAGCGAGTATTGAGGAGGAAAAGAGGATGGCTGAAGAGAGGAGAATGGCTGCTGAAAATGCAGTTGTGGAGGAGGAGAGGAGGCTGATTGAGGAAAGGAGGCTAGCTGAAGAGAGGAGATTGGTTGCTGAGGTTGCATTGATGGAAGCTGAGATGGGAGTGGGTGAAGAGAGGAATGTGGGGGGAGCTGCTGCAGGGGTAGATGTGGAGACGCCGCATAGAAGAAGGGGTCGTGTTCGTAACCGCATTCGTGGTGATATGAGGGCAGCGGCATTGATGAGGAAACGTGAGTTGTGGCTTTATCGTGATAAGCGGATAGTTGGACCGATACCTGGAGTTTATGTTGGTGATGTGTTTCTTTTTAGGATGGAGTTGTGTGTAGTTGGTTTGCATATGCAAATACAAGCTGGTATTGATTATCTACCTAAGAGTAGGTGTTCCAATGGTGAGCCGATTGCTACCAGTGTGATTGTCTCGGGCGGTTATGAGGATGATATGGAATTGGATGACGGCGATGTTATAATCTACACTGGCCATGGAGGACAAGAGAAGAATTCCTCAAGGCAAATCTGTGATCAGAAATTGGTGGGCGGAAACCTTGCTATGGAAAGGAGTATGCATTATGGCATTGAGGTTAGGGTTATCCGTGGGATGAAGTATGAAGGGAGTGCGTCCGGTTCTGGTAAGGTATATGTATACGACGGACTATATAGAATTGTTGATTGTTGGTTTGATGTTGGAAAGTCTGGTTTTGGAGTTTACAAGTATAGGCTTTTGAGAATTGAGGGGCAAGCTAAGTTGGGTAGTGCTGTTCTCAAAGAAGCTAGAGATATTAAGAAAAGCGGGTTGGATTTTAAGCCTATGTATTGTCTTTCTGTTGATATATCTAACAACAAGGAGAGTGTTCCTGTTAGGCTTTTTAATGACATAGACGACAATCAAGAGCCTCTTTTTTATGAGTATCTTCGGAATACTAGTTTTCCACAGTTTGTGTTTCATCAGAGTGGGAAAGCTACTGGTTGCCAGTGTGTGGAAGCTTGTACTGATGGTTGCTTTTGCTCTatgaagaatggaggagagttTCCTTATAATCTACAGGGGTTGCTTGTGAGAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGTTCCTGTCCTCCCAATTGTCGGAATCGTGTTGCACAAAAGGGGATCAAATTTAGGCTGGAAGTGTTTAGGTCTACTCAAACGGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAGGCCGGAGCTTTTATCTGCGAGTATACAGGGGTTGTTTTGACTCGTGAGCAGGCACAGATTTTAACAATGAATGGCGACTCGTTGATATATCCTAATCGGTTTTCAGATAGATGGGCAGAATGGGGGGATTTATCTCAGATATACACTGATTATGAGCGCCCATCATATCCATCAATTCCTCCGTTAGATTTTTCTTTGGATGTGTCAACAATGAGAAATGTTGCTTGCTATATGAGCCATAGTTCGAGTCCAAATGTGTTTGTTCAGTATGTTCTCTACGATCACAACAATCTGATGTTCCCTCATGTTATGCTATATGCAACAGAGAATATCCCTCCAATGAGAGAGCTGAGCATTGATTATGGTGTAGCGGATGAGTGGACTGGCAAACTCTCCATATGTATGTAA 2373 0.4248 MDSFLTLETPSPSPTPSHQIPNINVPNFTFSHQIPNILPPNSTTFISPPNSSTTFISPPTTTISTGQPLQTLLVPKPEPFDEFLATQDTQQQPFYSPGSGGRNEQSELYSEFYRVSELFNSTFGKSFYPFLQIDDSNNVDNNMVNVCNPDLNLNPNHVVDSVDSQSFEIEENNDRALVVVPEQRQESSSQVAVVRKRANQVMELVRVSDLSVKDQINLRELMRKTRMVYDSLRVLASIEEEKRMAEERRMAAENAVVEEERRLIEERRLAEERRLVAEVALMEAEMGVGEERNVGGAAAGVDVETPHRRRGRVRNRIRGDMRAAALMRKRELWLYRDKRIVGPIPGVYVGDVFLFRMELCVVGLHMQIQAGIDYLPKSRCSNGEPIATSVIVSGGYEDDMELDDGDVIIYTGHGGQEKNSSRQICDQKLVGGNLAMERSMHYGIEVRVIRGMKYEGSASGSGKVYVYDGLYRIVDCWFDVGKSGFGVYKYRLLRIEGQAKLGSAVLKEARDIKKSGLDFKPMYCLSVDISNNKESVPVRLFNDIDDNQEPLFYEYLRNTSFPQFVFHQSGKATGCQCVEACTDGCFCSMKNGGEFPYNLQGLLVRGKPLIFECGPFCSCPPNCRNRVAQKGIKFRLEVFRSTQTGWGVRSLDLIQAGAFICEYTGVVLTREQAQILTMNGDSLIYPNRFSDRWAEWGDLSQIYTDYERPSYPSIPPLDFSLDVSTMRNVACYMSHSSSPNVFVQYVLYDHNNLMFPHVMLYATENIPPMRELSIDYGVADEWTGKLSICM 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03117 790 SUPERFAMILY PUA domain-like 323 506 IPR015947 -
Tsu04g03117 790 SUPERFAMILY SET domain 519 789 IPR046341 -
Tsu04g03117 790 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g03117 790 SMART preset_2 526 618 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu04g03117 790 ProSiteProfiles Pre-SET domain profile. 573 631 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu04g03117 790 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 68 787 - -
Tsu04g03117 790 SMART set_7 634 783 IPR001214 GO:0005515
Tsu04g03117 790 Pfam SAD/SRA domain 341 498 IPR003105 -
Tsu04g03117 790 ProSiteProfiles YDG domain profile. 342 494 IPR003105 -
Tsu04g03117 790 Coils Coil 235 262 - -
Tsu04g03117 790 Pfam Pre-SET motif 529 626 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu04g03117 790 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 68 787 - -
Tsu04g03117 790 SMART G9a_1 337 498 IPR003105 -
Tsu04g03117 790 Gene3D - 339 502 IPR036987 -
Tsu04g03117 790 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 134 789 IPR025794 GO:0016571
Tsu04g03117 790 Pfam SET domain 645 777 IPR001214 GO:0005515
Tsu04g03117 790 Gene3D SET domain 503 790 IPR046341 -
Tsu04g03117 790 ProSiteProfiles SET domain profile. 634 777 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03117 Tsu-Chr4 38793951 38798325 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03117 318 779 Su(var)3-9 homologs AT5G04940 38.831 1.52e-100 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu04g03117 SAD_SRA 1.6e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03117 K11420 - gmx:100785015 882.478