Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03111 ATGGCTCGTTCAGTTCCTTTGGTTTCCACCATCTTTATCTTCATTCTCCTTCTTGTAGCCACTGGGCCAAGTATGATGGCTGAGGCAAGGACATGTGAGTCACAAAGTCACAAATTTAAAGGACCATGTGTGAGTGATCATAATTGTGCTTCTGTGTGCCAAACAGAACGTTTCCCTGGAGGACACTGCCGTGGATTCCGTCGTAGATGCTTTTGCACTACACATtgttcttaa 234 0.4402 MARSVPLVSTIFIFILLLVATGPSMMAEARTCESQSHKFKGPCVSDHNCASVCQTERFPGGHCRGFRRRCFCTTHCS 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03111 77 SUPERFAMILY Scorpion toxin-like 30 76 IPR036574 -
Tsu04g03111 77 CDD Knot1 41 73 IPR003614 GO:0006952
Tsu04g03111 77 SMART gth_4 31 76 IPR003614 GO:0006952
Tsu04g03111 77 Pfam Gamma-thionin family 30 76 - -
Tsu04g03111 77 Gene3D - 30 76 IPR036574 -
Tsu04g03111 77 PRINTS Purothionin signature 31 46 IPR008176 GO:0006952
Tsu04g03111 77 PRINTS Purothionin signature 61 75 IPR008176 GO:0006952
Tsu04g03111 77 ProSitePatterns Gamma-thionins family signature. 30 53 IPR008176 GO:0006952
Tsu04g03111 77 PANTHER DEFENSIN-LIKE PROTEIN P322 1 76 - -
Tsu04g03111 77 PANTHER DEFENSIN-LIKE PROTEIN 1 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03111 Tsu-Chr4 38661667 38662711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03111 1 76 Plant Defensins Gene Families AT2G02100 61.039 6.62e-29 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03111 - - gmx:547843 100.908