Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03091 aTGGCGATGCTGTTAAGAAAACTCCGCGATTCAGCATCATCGTTAAAGCAACGATCAaccacatcatcatcatcgtcacgctctcatcctcttcctcttcctcttcctttAGGTTCATTCGATTCACTCCCTTATGAATTACTCCTCAAAATCATACGATTATTGGATCCTAAACAAGCAGCTAAACTTTGCATCGTTTGCAAATCATGGCGATCTCTCGTCTCCGATAACCAACTCTGGGCTTATTTTCTTCAAACATATCAACCTCTACACTTTGATTCTATTCTCTTCTCAGAAATTAACTTAATCTCTGGTTATCCTCTTCCgATCTTTGTTAATCAGACGCCTAGCGTGTCGTTTAAGCAGGTTTATGGCCAACGGGAGCGAGTTCCTCCCGCTGTTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAAGACGAGAGTCCATTGGGGCGAACTGCTACCTTTTTGGAATTTGGTAATGTGGAAACGCCAATATATACTAGGCTTCGGCATTTTTTTGCGACTGTCTATGGCAGGATGAAGGTGAAACCAAGTTCTCAACCTGTTGTTGTTTCTTTACCATTATGCCACTATGATGATACCAATTCAGCCAAAGCATCAAGACATCAGCTTAAAGAAGCAATATGCTCTGCGCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTCAACCAGGCAACTTTAGCTCTCTTTGCTGCAAATCAAACTTCTGGAATAGTTGTAAATATAGGCTTTCAAGTCACATCTGTAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTCGGTGTGGAGGTTGTGGGGCTGGGAGCACTAAAACTTACAGGATTTCTTAGAGAGAAAATGCAACAAAACAACATATATTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGCTATGCTATGTTGCCTATGACTATGAAGCTGAGCTATTGAAAGATACACATGCATCATTTGAAGCCGTTGAAGGGAATTTTACACTCTCAAAAGAGAGGTTTCAGACAGGAGAGATATTATTCCAGCCACGTCTTGCTGGGATGCGAGCAATGAGTTTGCACCATGCCATAGCTCTCTGTATGGACCATTGTCATTCTGCAGAATTAGCAGGCGGCAGTGATTGGTTTAAGACCATTGTCTTATCCGGAGGGTCTGCATGTTTACCAGGTTTAGCAGAAAGATTAGAGAAGGAACTTCATTTGTTACGTCCTCCTTATATGTCGAATGGAATCAGAGTCATCCCTCCTCCACATGGTGCGGATACAGCATGGTTTGGTGCAAAGCTTATTGGCAGTTTGAGCACATTTCCCGCCCCCTGGTGTTCAACAAAGAAGCAGTTTCGTCAGAATAAACTCAACCGAATATGGTGA 1410 0.4057 MAMLLRKLRDSASSLKQRSTTSSSSSRSHPLPLPLPLGSFDSLPYELLLKIIRLLDPKQAAKLCIVCKSWRSLVSDNQLWAYFLQTYQPLHFDSILFSEINLISGYPLPIFVNQTPSVSFKQVYGQRERVPPAVIIDGGSGYCKFGWSKDESPLGRTATFLEFGNVETPIYTRLRHFFATVYGRMKVKPSSQPVVVSLPLCHYDDTNSAKASRHQLKEAICSALFDMNVPAVCALNQATLALFAANQTSGIVVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNNIYFESLYTVRTLKEKLCYVAYDYEAELLKDTHASFEAVEGNFTLSKERFQTGEILFQPRLAGMRAMSLHHAIALCMDHCHSAELAGGSDWFKTIVLSGGSACLPGLAERLEKELHLLRPPYMSNGIRVIPPPHGADTAWFGAKLIGSLSTFPAPWCSTKKQFRQNKLNRIW 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03091 469 PANTHER ACTIN 92 464 IPR004000 -
Tsu04g03091 469 SUPERFAMILY F-box domain 33 102 IPR036047 GO:0005515
Tsu04g03091 469 Pfam F-box-like 41 81 IPR001810 GO:0005515
Tsu04g03091 469 Gene3D Actin; Chain A, domain 4 281 363 - -
Tsu04g03091 469 Pfam Actin 212 456 IPR004000 -
Tsu04g03091 469 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Tsu04g03091 469 SUPERFAMILY Actin-like ATPase domain 248 457 IPR043129 -
Tsu04g03091 469 SUPERFAMILY Actin-like ATPase domain 132 253 IPR043129 -
Tsu04g03091 469 MobiDBLite consensus disorder prediction 14 30 - -
Tsu04g03091 469 Gene3D - 238 435 - -
Tsu04g03091 469 Gene3D - 36 131 - -
Tsu04g03091 469 SMART fbox_2 43 83 IPR001810 GO:0005515
Tsu04g03091 469 Gene3D - 134 461 - -
Tsu04g03091 469 MobiDBLite consensus disorder prediction 9 30 - -
Tsu04g03091 469 SMART actin_3 131 469 IPR004000 -
Tsu04g03091 469 PANTHER ACTIN-RELATED PROTEIN 8 92 464 - -
Tsu04g03091 469 CDD NBD_sugar-kinase_HSP70_actin 134 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03091 Tsu-Chr4 38302480 38310293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03091 180 463 Cytoskeleton Gene Families AT5G09810 33.784 1.96e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03091 K16616 - gmx:100804254 708.753