Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03089 ATGAGTTCGTTCTCCATTACGAGGAAAAAGACACCATTTCAGAAGCATAGAGAAGAGGAGGAAGCAAAGAAAAAGAGAGCGGAAGATGAGACTGCTCGCCTGTATGCCGAATTTGTAGAGTCGTTTCAAGGGGATAACGCTCCTGGGTCAAAGACTTTTGTTCGGGGAGGAACAATTAATCCCAATGATAAATTGAAAGATGATTCTGAAGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGGTATGTGCCATCTTTTATACCGCCTCCATTGGCAACCAAAGGGAAAGAACCTGAAAGAAAAAAAGAGGAAGAAAAGCcaaaggaaaaagagaaagGAAAATCAAGGAACATTGATCATTTTATGGAGGAGTTAAAGCAAGAGCAAGAGATGAGGGAGAGACGAAATCAAGACCGTGAACAATGGCGTGATGGGCGTCCTGGAGAGCATTCTATTTCCAGTCGTTTTGATGAACTGCCTGACGATTTTGATCCTAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTTTACGTTGGAAATCTCTCACCCCAGGTTGATGAAAATTTTCTTCTGCGCACTTTTGGGAGATTTGGACCTATTGCTAGTGTGAAGATAATGTGGCCTCGAACAGAAGAGGAGCGAAGGCGACAAAGAAACTGTGGTTTTGTTGCATTCATGAACAGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAgGGGTTGTGGTTTATGAGTACGAATTGAAAATTGGGTGGGGAAAGTCCGTTGCCCTTCCATCACAAGCATTACCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAACACTGTTATCTTGTCTGGCCCATCAGGTCCACCAGTAACATCAGTGCCTAGTCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATCTAAGGCATGTAATTGATACAATGGCTTTGTATGTCTTGGACGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGGCGTGGCAACCCTCTTTTCAATTTCTTGTTTGTTCTTGGCTCAAAGGAGCATACTTACTATGTTTGGAGACTCTATTCATTTGCTCAGGGTGATACTCTTCAAAGATGGCGAACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCGCATTACCGATAGCCAAAAGTCCAGAACATGACAAAGAATCTGGCTCCACACATGCTGCTGGAAGAAGCAGGCGTGTAGAACCCGAAAGAACACTGACTGATGCACAGAGGGATGAGTTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGTCAGATAAAGGGGGCTATGGGATTTTCTTTGGATAACGCCGATGCAGCTGGCGAGATAGTTGAAGTGTTGACGGAATCCTTGACACTTAAAGAAACCCCCATTCCAACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCGGCATATCGCACCAAGTTTGAAGCAACGTTACCTGACATAATGGAGAGTTTTAATGACTTGTATCGCAGCATAATGGGGCGTATTACTGCCGAAGCCCTTAAGGAACGAGTACTGAAAGTTTTGCAAGTATGGGCCGATTGGTTTCTCTTTTCAGATGCTTATGTTAATGGCTTAAGAGCTACTTTCCTTAGACCTGGGAACTCTGGTGTCATACCGTTCCACTCCATATGTGGTGATGCACCTGAGATTGAGCAGAAGATCACTTCTGAAGATGCTGTTGTTGGTAGCAAGACCGACCAAGATGCTGCATTGGCAATGGGTCGAGGAGCTGCAACGAGAGAGCTAATGAGTCTTCCTCTTGCTGAGCTGGAAAGACGGTGTCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGCTAAGTCTCGAAGAGGCGGAAAAGCAAAGAGGTTTTGAACTGGATGATGAATTGAAATATCCCCTCAACCAACCAAGTTCAGGGAAATATTCAAGTAGTCGGCGAGAAACAAGTGCAGAGCCTGAACCAATGGGGTTGTCTGGATTGAATCAATACGGAGATGAAGATATGCAAGGCAAAGGTTTTGCACCTTTAGCGCCAACCCTTGCTATTCCACAGCCTGAACTTAAAGCCTtcacaaaaaaagagaagaatgaTCTAGTTTTGCCGGCCTCTAAATGGGCTCGGGAGGACGATGAGAGTGATGATGAGCAAGGGAAAGGTGGAAAAAATCTTGGGTTAAGCTACTCATCTTCTGGTAGTGAGAATGTGGGTGATGGCCTTATTAAAGCTGATGAATCAGAGGCTGCTGCTGATTCAAGTTTTCCAGCTCATGCTGATAGTGGAATGAATGAAGAGCAGAGGCAAAAGTTGAGACGCTTGGAGGTTGCTTTAATTGAATATCGCGAGTCTCTTGAAGAAAGGGGAATTAAAAACTTGGAGGAAATTGAGAAGAAAGTTTTAATGCACCGGAAGCGGCTGCAAGTTGAGTACGGGTTATCAGATTCTAGTGAAGATGGTCAAGGCAGCAGGAGAACATCTTCTGAGAGAAGGGATAGGCATGATATATCAAGGAAACGACACCGCAGCCATAGTCGAAGTCGTAGTCCACATCAGAAACCGTCAAGCAAGGACAGAGATAGAGGATGTGATTTAGAAAGGGAACGAGACAGAAAAAGAGATAGAAGTCGTGATTTCGACAGTGATAGAGGAAGAGACCGGCTTAGGGAGAAGAGTGGAAGCAGGGAGAGGGATGATCATGATAAGGATAGAGGCAGGGACAGGGACAGAGACAGGAGAAGACGCGCCAAATAA 2916 0.441 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYVPSFIPPPLATKGKEPERKKEEEKPKEKEKGKSRNIDHFMEELKQEQEMRERRNQDREQWRDGRPGEHSISSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGNTVILSGPSGPPVTSVPSQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPIAKSPEHDKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKGAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKITSEDAVVGSKTDQDAALAMGRGAATRELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGFELDDELKYPLNQPSSGKYSSSRRETSAEPEPMGLSGLNQYGDEDMQGKGFAPLAPTLAIPQPELKAFTKKEKNDLVLPASKWAREDDESDDEQGKGGKNLGLSYSSSGSENVGDGLIKADESEAAADSSFPAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVLMHRKRLQVEYGLSDSSEDGQGSRRTSSERRDRHDISRKRHRSHSRSRSPHQKPSSKDRDRGCDLERERDRKRDRSRDFDSDRGRDRLREKSGSRERDDHDKDRGRDRDRDRRRRAK 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03089 971 Gene3D - 817 868 - -
Tsu04g03089 971 MobiDBLite consensus disorder prediction 1 180 - -
Tsu04g03089 971 MobiDBLite consensus disorder prediction 61 80 - -
Tsu04g03089 971 PANTHER - 5 967 - -
Tsu04g03089 971 Gene3D - 443 589 IPR008942 -
Tsu04g03089 971 MobiDBLite consensus disorder prediction 905 964 - -
Tsu04g03089 971 ProSiteProfiles SAP motif profile. 637 671 IPR003034 -
Tsu04g03089 971 MobiDBLite consensus disorder prediction 889 904 - -
Tsu04g03089 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Tsu04g03089 971 MobiDBLite consensus disorder prediction 757 774 - -
Tsu04g03089 971 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Tsu04g03089 971 SMART rrm1_1 187 263 IPR000504 GO:0003723
Tsu04g03089 971 MobiDBLite consensus disorder prediction 683 732 - -
Tsu04g03089 971 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Tsu04g03089 971 Coils Coil 818 838 - -
Tsu04g03089 971 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Tsu04g03089 971 SUPERFAMILY ENTH/VHS domain 447 584 IPR008942 -
Tsu04g03089 971 MobiDBLite consensus disorder prediction 691 705 - -
Tsu04g03089 971 MobiDBLite consensus disorder prediction 757 822 - -
Tsu04g03089 971 Coils Coil 17 37 - -
Tsu04g03089 971 Gene3D - 97 269 IPR012677 -
Tsu04g03089 971 SMART cwf21_2 817 866 IPR013170 -
Tsu04g03089 971 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Tsu04g03089 971 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Tsu04g03089 971 MobiDBLite consensus disorder prediction 99 169 - -
Tsu04g03089 971 SUPERFAMILY Surp module (SWAP domain) 308 390 IPR035967 GO:0003723|GO:0006396
Tsu04g03089 971 MobiDBLite consensus disorder prediction 416 441 - -
Tsu04g03089 971 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Tsu04g03089 971 MobiDBLite consensus disorder prediction 417 441 - -
Tsu04g03089 971 MobiDBLite consensus disorder prediction 11 35 - -
Tsu04g03089 971 SMART 558neu5 450 585 IPR006569 -
Tsu04g03089 971 CDD RRM_SR140 185 268 IPR035009 -
Tsu04g03089 971 Pfam CID domain 450 578 IPR006569 -
Tsu04g03089 971 PANTHER RNA PROCESSING PROTEIN LD23810P 5 967 - -
Tsu04g03089 971 MobiDBLite consensus disorder prediction 863 971 - -
Tsu04g03089 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03089 183 263 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.18e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03089 K12842 - gmx:100776093 1591.25