Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03088 ATGAGTAATAGTGACGttgataaaaccttaaaagaaaaGGAGCCTAAGACGCCTCCAGCAGCTACATCACAGGAGCAGTCTTCAACAACAACTGGCACTCCGGCAGTTAATCCTGAATGGGCTAACTATCAGGCATATTCTCCTTTACCTCCACCTGGATACATGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGTGTCCAGCATATTATGCCTCCCTATGGCACCCCACCACATCCTTATGTCACAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTATGCTATGCCTTCTCCAAATGGTATGGTGGATGCTTCAGGGAATACTCCAGGCAGCAGTGAAGCAGACGGTAAACCTCACGAGGTGAAGGAAAAATTACCAATCaaaagatcaaaaggaagtATGGGCAGTATGAATATGGTTACAGGAAAAAATAATGAACTTGGTAAAACGCCAGGGGCATCTGCCAATGGAATTCATTCCAAAAGTGGTGAGAGTGCAAGTGAAGGTACTAGTGAAGGAAGCAATGAAAACTCCCATAATGACTCTCAATTGAAATCTGGGGAGAGGCAGGACTCTTACGAAGATCATGAACCTTCTCAAAATGGCAATTCAGTACATGCTCCTCAAAATGGGGTACCTAATACACCTCCTACAGTTAACCAAACTATGTCTGTCGTGCCTATGTCTGTTGCTGGTCCTCTCACAACAGTTCCCGGTCCCACTACTAACTTAAATATAGGAATGGAGTATTGGGGAACACCAACTTCATCCGCCATTCCTGCAATGCATGGAAAGGTACCTTCTACTGCAGTTGCTGGAGGGATGGTTAATGCTGGGCCACGAGATGGTGTTCATTCACAACTTTGGCTACAGGATGAAAGGGAACTTAAAAGACAAAGGCGGAAGCAGTCTAATAGGGAATCTGCACGTAGATCCAGGTTGCGAAAGCAGGCGGAATGTGATGAACTAGCTCAGCGTGCTGAGgttttgaatgaagaaaatgcctCTCTCCGTGCTGAACTGAGCCGGATCAAGAGTGAGTACGAGAAGGCACTTTCTGAGAATGCAGCTCTCAAGGAGAGACTTGGGGAGATACCAAGGAGCGAGGATCTTGGGCCGGGCCAGAATGATCAGCATGTGGGTGAACTCACTCAACAGAGTGGTTAG 1209 0.4524 MSNSDVDKTLKEKEPKTPPAATSQEQSSTTTGTPAVNPEWANYQAYSPLPPPGYMASSPQAHPYMWGVQHIMPPYGTPPHPYVTMYPHGGIYAHPSMPPGSYPFSPYAMPSPNGMVDASGNTPGSSEADGKPHEVKEKLPIKRSKGSMGSMNMVTGKNNELGKTPGASANGIHSKSGESASEGTSEGSNENSHNDSQLKSGERQDSYEDHEPSQNGNSVHAPQNGVPNTPPTVNQTMSVVPMSVAGPLTTVPGPTTNLNIGMEYWGTPTSSAIPAMHGKVPSTAVAGGMVNAGPRDGVHSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENASLRAELSRIKSEYEKALSENAALKERLGEIPRSEDLGPGQNDQHVGELTQQSG 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03088 402 MobiDBLite consensus disorder prediction 129 143 - -
Tsu04g03088 402 Pfam Disordered region downstream of MFMR 137 274 - -
Tsu04g03088 402 MobiDBLite consensus disorder prediction 1 15 - -
Tsu04g03088 402 Pfam G-box binding protein MFMR 1 98 IPR012900 -
Tsu04g03088 402 Coils Coil 327 375 - -
Tsu04g03088 402 CDD bZIP_plant_GBF1 312 362 IPR045314 GO:0003700|GO:0006355
Tsu04g03088 402 MobiDBLite consensus disorder prediction 113 236 - -
Tsu04g03088 402 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 309 372 IPR004827 GO:0003700|GO:0006355
Tsu04g03088 402 MobiDBLite consensus disorder prediction 1 38 - -
Tsu04g03088 402 SUPERFAMILY Leucine zipper domain 310 363 IPR046347 GO:0003700|GO:0006355
Tsu04g03088 402 SMART brlzneu 307 371 IPR004827 GO:0003700|GO:0006355
Tsu04g03088 402 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 314 329 IPR004827 GO:0003700|GO:0006355
Tsu04g03088 402 MobiDBLite consensus disorder prediction 373 402 - -
Tsu04g03088 402 MobiDBLite consensus disorder prediction 19 38 - -
Tsu04g03088 402 MobiDBLite consensus disorder prediction 196 210 - -
Tsu04g03088 402 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 402 IPR044827 GO:0003700|GO:0006355|GO:0043565
Tsu04g03088 402 MobiDBLite consensus disorder prediction 148 195 - -
Tsu04g03088 402 MobiDBLite consensus disorder prediction 308 332 - -
Tsu04g03088 402 Pfam bZIP transcription factor 307 369 IPR004827 GO:0003700|GO:0006355
Tsu04g03088 402 Gene3D - 310 365 - -
Tsu04g03088 402 MobiDBLite consensus disorder prediction 211 236 - -
Tsu04g03088 402 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03088 Tsu-Chr4 38257963 38263074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03088 1 402 bZIP Transcription Factor Family AT2G35530 62.836 1.02e-166 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Tsu04g03088 MFMR_assoc 1.8e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03088 K09060 - gmx:100101912 598.586