Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03081 ATGGAAATACAAAGTGTGATGCTCTTTTTGGTATTCTTATGGGCTGAAATTCATCTCATCTCTTCATTAACTGATTCTCAAGATGTTGCTGCACTTAGATCACTTAAAGATATATGGGAAAATACACCACCCAGCTGGGACAAATCAGATGACCCTTGTGGAGCACCTTGGGAAGGAGTGACCTGCAACAAATCAAGGGTTACTTCATTAGGACTCTCAACCATGGGCTTGAAGGGTAAATTAAGTGGAGATATTGGTGGACTCACAGAATTAAGATCCTTAGATTTGTCCTTTAATAAAGGTTTAATGGGTCCTATCTCTCCAGAATTAGGAGACTTAAGCCAGCTTAATATTCTGATTTTGGCTGGTTGTAGCTTCAGTGGCAATATTCCAGATAAATTTGGAGATCTTTCAGAGCTATCTTTCTTgGCTTTGAATTCAAACAACTTCACTGGAAAAATACCTTCTTCATTGGGAAAACTCTCCAAACTTTATTGGTTGGACTTAGCAGATAATCAGCTTACAGGACCTATTCCAGTTTCAACTTCCACAACACCTGGCTTAGACCTACTTTTAAAGGCTAAGCACTTCCATTTCAATAAGAATCAACTTTCTGGTTCTATTCCTCCAAAACTTTTCAACTCTGACATGAAACTCATACACATATTATTTGATAAGAATGATTTAAGTGGAAGTATACCTTCAACAATAGGACTAGTTCAGACAGTTGAGGTTCTTCGGCTCGATCGAAATTTCTTGACAGGAGAAGTTCCTTCAAATCTCAACAACCTTAGTAACATCAATGAATTGAATTTAGCACACAACAATTTGTCAGGTCCTTTGCCAGACTTAACTTCAATGGATACCCTCAACTATGTGGATCTTAGTAACAACAATTTTGATCCATCAGAAGCTCCAAGTTGGTTCACAACTCTACCATCACTTACCACTCTTATCATGGAGTTTGGATCTCTTGAAGGTCCTCTTCCATCAAAACTCTTCAGCAATGCTCAAATACAACAAGTAAAACTAAGAAACAATGCATTGAACGATACACTAGACATGGGCGACAACATTTGTCCGCAACTGCAGCTTGTGGATTTACAAAACAACCACATTTCATCAGCAACACTCAATTCAGAATACAAAAATACATTGCTTCTCATAGGAAATCCAGTTTGCAATGATGCTCTCTCTACTACAAATTACTGCAACCTTCAGCAGCAGCCTAAACAACCGTATTCAACAAGCTTGGCGAATTGTGGAGCAATATCATGTCCCTCTGAACAAAAACTCAGTCCACAAAGTTGTGAATGTGCTTATCCATATCAAGGAACGTTCTACTTTAGAGGACCCTTGTTTAGAGGATTGTCTAATATAAGTACTTTTCATTCACTTGAAATGAGCTTATGGGTGAAATTAGGCTTAACACCTGGTTCAGTTTCTTTACAAAATCCTTTTTTCAATGGTGATGATTATCTTCAAATGCAACTAGCACTCTTTCCACCAACAGGACTATATTTTAATAGGTTAGAAGTTCAAAGAATTGGATTTTCATTGAGTAATCAAACTTACAAGCCTCCACATGAATTTGGACCCTATTACTTCATTGCAATTCCTTATGCTTTTCCAGATTCGCGCAAAGGATCTACTTTTAGCAAAGGTGAAATTATCGGGATAGCAGCTGGGAGCACAATTTTACTTGTGTGCCTCATAGGGTTAGTTGTATACGCAATCCTGCAAAAGAAGCGCGCAGAGAAAGCAATCGGAATAAGTAGACCATTTGCATCATGGGCACCAAGTGGCAAGGATAGTGGAGGTGCACCGCAATTGAAGGGAGCAAGATGGTTCTCTTATGATGAACTCAAAAAGTGCTCCAACAATTTCTCTGGAAGCAATGAACTTGGCTCTGGTGGCTATGGCAAGGTGTACAAAGGGGTGTTCCCTGATGGAAAAATAGTAGCAATCAAAAGAGCTCAGCAAGGATCAATGCAAGGAGGCCTAGAGTTCaagaatgaaattgaattaCTTTCAAGAGTTCATCACAAGAATCTTGTTAGCCTAGTTGGGTTCTGCTTTGAACAAGGAGAACAAATGTTGGTTTATGAATTTATCTGCAATGGATCACTTAGGGATAGTTTGTCAGGTGAGTTCACATTGAAGGAACTCCCAAGCCGAAAGTGTGTTAGCCACTTAAAAAGTTATCCTGAAAGTTGTCTAAATTTATTCgtacaaaaatcatttttctatgGAACAGGAGAAAAAAGTTGTCTATTAGAATCCATAATACTGCTTATGAAACTAATAGAATCTTGTGCATCAAACAATGTGAGTTGCAGGGAAATCTGGTATTCAACTTGA 2361 0.3795 MEIQSVMLFLVFLWAEIHLISSLTDSQDVAALRSLKDIWENTPPSWDKSDDPCGAPWEGVTCNKSRVTSLGLSTMGLKGKLSGDIGGLTELRSLDLSFNKGLMGPISPELGDLSQLNILILAGCSFSGNIPDKFGDLSELSFLALNSNNFTGKIPSSLGKLSKLYWLDLADNQLTGPIPVSTSTTPGLDLLLKAKHFHFNKNQLSGSIPPKLFNSDMKLIHILFDKNDLSGSIPSTIGLVQTVEVLRLDRNFLTGEVPSNLNNLSNINELNLAHNNLSGPLPDLTSMDTLNYVDLSNNNFDPSEAPSWFTTLPSLTTLIMEFGSLEGPLPSKLFSNAQIQQVKLRNNALNDTLDMGDNICPQLQLVDLQNNHISSATLNSEYKNTLLLIGNPVCNDALSTTNYCNLQQQPKQPYSTSLANCGAISCPSEQKLSPQSCECAYPYQGTFYFRGPLFRGLSNISTFHSLEMSLWVKLGLTPGSVSLQNPFFNGDDYLQMQLALFPPTGLYFNRLEVQRIGFSLSNQTYKPPHEFGPYYFIAIPYAFPDSRKGSTFSKGEIIGIAAGSTILLVCLIGLVVYAILQKKRAEKAIGISRPFASWAPSGKDSGGAPQLKGARWFSYDELKKCSNNFSGSNELGSGGYGKVYKGVFPDGKIVAIKRAQQGSMQGGLEFKNEIELLSRVHHKNLVSLVGFCFEQGEQMLVYEFICNGSLRDSLSGEFTLKELPSRKCVSHLKSYPESCLNLFVQKSFFYGTGEKSCLLESIILLMKLIESCASNNVSCREIWYST 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03081 786 Gene3D Ribonuclease Inhibitor 184 285 IPR032675 -
Tsu04g03081 786 Gene3D Phosphorylase Kinase; domain 1 603 704 - -
Tsu04g03081 786 ProSitePatterns Protein kinases ATP-binding region signature. 635 657 IPR017441 GO:0005524
Tsu04g03081 786 SUPERFAMILY L domain-like 32 300 - -
Tsu04g03081 786 PANTHER LRR RECEPTOR-LIKE KINASE 1 718 - -
Tsu04g03081 786 Pfam Protein tyrosine and serine/threonine kinase 633 717 IPR001245 GO:0004672|GO:0006468
Tsu04g03081 786 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 718 - -
Tsu04g03081 786 SUPERFAMILY L domain-like 285 397 - -
Tsu04g03081 786 ProSiteProfiles Protein kinase domain profile. 629 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03081 786 SUPERFAMILY Protein kinase-like (PK-like) 609 718 IPR011009 -
Tsu04g03081 786 Gene3D Ribonuclease Inhibitor 28 183 IPR032675 -
Tsu04g03081 786 Gene3D Ribonuclease Inhibitor 286 386 IPR032675 -
Tsu04g03081 786 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03081 Tsu-Chr4 38169542 38177638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03081 5 717 Receptor kinase-like Gene Family AT1G79620 69.946 0.0 1073
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Tsu04g03081 PK_Tyr_Ser-Thr 1.2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03081 - - gmx:100792249 1226.46