LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g03079	ATGGATGAGGTTAGAGTTGGTGTTAGTAGTTGTAGTAGTGAAGCAGAGCAGACTCAGTCAAGAATTACAGTTGAGGAGACGGCGGCTTCTTCGTCTTCTGGATGGCGTCCTAGGGAGCTTGCTTTTGCTGCTTTCGTTCCGCGGGATAAAGAAGAACAACAAGAAGATGAACGTGTTAATGCTGCTGGGAAGTTCTTAAAGTACCGTGCATTTGTTAGGAGACCtTTGGTGGGAAGATTGACCAAGGAAATAGTTGAAACATACCGAATATGCAATCCACAGTTTAAATATTCTGAAGATCTAAATCCAAAGAGATTTTTGACCAGCCCATCTATTGGAGTGCTTAATGATGGCTATGATAATGCAAACTCGGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATGTAGAGAAAAGTAGAAGATATACTGTCAAAGATCTCCTTGGCCATGGGACATTTGGACAAGTGGCCAAATGCTGGGATTCAGATACCAACAGTTTTGTTGCTGTCAAGATCATTAAAAATCAACCTGCATACTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTATGATCCCGAGGATAAGAATCACATTGTCCGtatatatgattattttgtATATCAAAGACATTTGTGCATATGCTTTGAACTGCTGGACACAAATTTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTGTCGATTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTCTTAAAAAATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCTCTGTGAAGCAGGCAGAAATAAAGATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTTTATTCCTATATTCAGAGTCGATACTATAGGTCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATAGTGGCGGAATTGTTTCTTGGATTACCATTATTCCCCGGGGCTTCAGAGTTTGATCTTTTGAGAAGGATGATTGAAATAATTGGAGGACAACCACCTGATTATGTACTACGGGATGCCAAAAACACTAGTAAATTCTTTAAGTGTATTGGGAGTCTCCAAAACATAGAAATCAGTGAGGGTTCCAAAAATGGACGTGTTTATCAAGCATTGACAGAGGAAGAATATGAAGCTAGAGATTTGAAGAAGCCATCAATTggaaaagaatattttaataatatgaaTCTTGAAGCAATTGTTACAAACTACCCCTACAGGAAAAACCTACCAAAGGAAGATATTGCCAAAGAAAAGCAAACACGATTGGCTCTTATTGACTTTTTGAGAGGGCTCGTTGAATTTGACCCTGCAAAACGCTGGTCACCATTCCAGGCTTCAAAACACCCTTTTATAACCGGGGAACCTTTTACTCACCCTTACAGACCTTCCCCTGAGACCCCTTACATTCCAGTAGTTCAAAACATCAAGGTTGATAATCATCCAGGTGGAGGACACTGGTTTGCTGCTGGTCTATCACCGaatGTTGCAGGCAAAAACAGAGCTTCCCTCTATAGCAGTCCGCATTTTCAGATGGCACAACATCCACCTGCTAATAGTTACGGCAGTGTAGGAAGCCATGGGAGCTATAATGATGGTGCTGGGCTTGGAAGCAGCTATGGAAGTTATGGAGAGAGCAGTAACATGTTTGCTTACTATTCACCTGTCGCTCCATCTGGTATGAACATGCACAATCAGGGCGGTATGTCAATGCTTGGAAATAGTCCTGATGCTCGGAGAAGAATTAAGTACCAACCTGGGAATGGACTGGGTGTAAGTCCATCTGGTGGAAATTTCGCTCCCTTGCCTCTTGGTGCCAGCCCGTCTCAATTTACTCCGCCAAGTTCCTATAGTCAGATTTCAGTTGGTTCCCCAGGACATTTTGGACCTACATCTCCTGCAAGAGGAGCTGCTCATGGATCACCTTTAGGCAAGACTGCTGCAGCCAGCCAGTTtaatagaagaaaaaattggGGACATTCTGGAAGTCCTCAAACTCAAGAAACAGCATTTTCTTCACATTGGCATGGTCAATATCCTGATAGCACAAGCCAAGCGGAGGGAACATCACAAGCTCCTGGAAGTTCACCATCGTATATACAATCAAATATTAATCCCGGGAACTGGAAGCAGCGCGGAAGTGGAGGGGTTTCTGCTAATCAGAAGATTCCATCCATGGTTATGCCTGGTTCTAATATGAACTCACAGTCGACAGAATTGATTCATGACAATGTGGAGACCGGTTTTTCATTGCCGGATCCTGGAGATTGGGATCCTAATTATAGTGATGAACTACTTCTGCAAGAGGGTGGTTCAGATGAAAGCTGTTTGACAACTGAGTTTGGCAGAAGTATGAATCTAGGTTCCATAGAGCCGTGGTCTGGATTTGGAAGACTAAATGGACCTGGTCAAACATTTTCTACTGTAGAGATGGGTAGCCCCCCAACACATGATTTCCAAGCAGCATATATACATTCTATGTCAAAGCCTTTTCATATCATGCCtcatatttcacaaaattcTCCAAGCCGTTTTGGACACCAATCTGTTCAAAGATTTACACATGGTAGACCCCCTCAGGGTAGTGACTGGAATCAAATTAAGATTCAGGCTCCTTCTGGTTTCAGCAACGTGGGTCCGCGTTCTCCCAGGAATGCCTCATTCACTGGCAATATGTCATGGGGGCGAAGAATGAATCCTCCTACTTCAAGCATTCCTCCTATCTCAAACATACCACCCACATCCCGTTCAAGAAAAGACTATGCAAGGATAGACTAG	2877	0.4174	MDEVRVGVSSCSSEAEQTQSRITVEETAASSSSGWRPRELAFAAFVPRDKEEQQEDERVNAAGKFLKYRAFVRRPLVGRLTKEIVETYRICNPQFKYSEDLNPKRFLTSPSIGVLNDGYDNANSDLILTVNLVLIHVEKSRRYTVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKNHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSIGIVQLFSKQILCGLALLKNAGIIHCDLKPENILLCTSSVKQAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIEIIGGQPPDYVLRDAKNTSKFFKCIGSLQNIEISEGSKNGRVYQALTEEEYEARDLKKPSIGKEYFNNMNLEAIVTNYPYRKNLPKEDIAKEKQTRLALIDFLRGLVEFDPAKRWSPFQASKHPFITGEPFTHPYRPSPETPYIPVVQNIKVDNHPGGGHWFAAGLSPNVAGKNRASLYSSPHFQMAQHPPANSYGSVGSHGSYNDGAGLGSSYGSYGESSNMFAYYSPVAPSGMNMHNQGGMSMLGNSPDARRRIKYQPGNGLGVSPSGGNFAPLPLGASPSQFTPPSSYSQISVGSPGHFGPTSPARGAAHGSPLGKTAAASQFNRRKNWGHSGSPQTQETAFSSHWHGQYPDSTSQAEGTSQAPGSSPSYIQSNINPGNWKQRGSGGVSANQKIPSMVMPGSNMNSQSTELIHDNVETGFSLPDPGDWDPNYSDELLLQEGGSDESCLTTEFGRSMNLGSIEPWSGFGRLNGPGQTFSTVEMGSPPTHDFQAAYIHSMSKPFHIMPHISQNSPSRFGHQSVQRFTHGRPPQGSDWNQIKIQAPSGFSNVGPRSPRNASFTGNMSWGRRMNPPTSSIPPISNIPPTSRSRKDYARID	958

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g03079	958	ProSitePatterns	Protein kinases ATP-binding region signature.	149	172	IPR017441	GO:0005524
	Tsu04g03079	958	SUPERFAMILY	Protein kinase-like (PK-like)	137	508	IPR011009	-
	Tsu04g03079	958	SMART	serkin_6	143	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g03079	958	MobiDBLite	consensus disorder prediction	904	958	-	-
	Tsu04g03079	958	Gene3D	Transferase(Phosphotransferase) domain 1	224	486	-	-
	Tsu04g03079	958	MobiDBLite	consensus disorder prediction	10	34	-	-
	Tsu04g03079	958	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	266	278	IPR008271	GO:0004672\|GO:0006468
	Tsu04g03079	958	MobiDBLite	consensus disorder prediction	1	35	-	-
	Tsu04g03079	958	PANTHER	BNAC04G29850D PROTEIN	29	901	-	-
	Tsu04g03079	958	Gene3D	Phosphorylase Kinase; domain 1	108	223	-	-
	Tsu04g03079	958	ProSiteProfiles	Protein kinase domain profile.	143	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g03079	958	MobiDBLite	consensus disorder prediction	642	659	-	-
	Tsu04g03079	958	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	29	901	-	-
	Tsu04g03079	958	MobiDBLite	consensus disorder prediction	904	949	-	-
	Tsu04g03079	958	MobiDBLite	consensus disorder prediction	600	752	-	-
	Tsu04g03079	958	CDD	PKc_YAK1	143	485	-	-
	Tsu04g03079	958	Pfam	Protein kinase domain	143	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g03079	958	MobiDBLite	consensus disorder prediction	679	752	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g03079	Tsu-Chr4	38116042	38126910	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g03079	139	372	MAP Kinase Gene Family	AT1G18150	33.878	6.83e-31	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Tsu04g03079		Pkinase	6e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g03079	K18670		-	gmx:100792777	1613.2