Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g03074 | ATGACAACCGGCCTCAAGAAAAACCGCAAGAAGCGCGGTCACGTAAGCGCCGGCCATGGCCGTATCGGAAAACACCGCAAGCATCCAGGAGGAAGAGGTAACGCCGGAGGTATGCATCACCACCGTATCCTATTCGACAAGTACCATCCTGGTTACTTCGGTAAAGTAGGTATGCGATACTTTCACAAACTCCGCAACAAATTCCACTGTCCAACCGTTAACATTGATACACTCTGGTCTCTTCTACCTCAAGAGGTGAAAGACAAAGCTTCGAAATCAAAGGATGTTGCTCCAGTAATCGATGTTTCTCAGTTTGGTTACTTTAAGGTTCTTGGTAAAGGTGTTTTGCCAGAGAATCAAGCTGTTGTTGTTAAAGCTAAGCTGATTTCGAAGATTGCTGAGAAGAAGATTAAAGAGGCTGGTGGTGCTGTTCTTCTTACTGCTTAA | 447 | 0.4541 | MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPTVNIDTLWSLLPQEVKDKASKSKDVAPVIDVSQFGYFKVLGKGVLPENQAVVVKAKLISKIAEKKIKEAGGAVLLTA | 148 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g03074 | 148 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Tsu04g03074 | 148 | Pfam | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | 28 | 144 | IPR021131 | - | |
Tsu04g03074 | 148 | ProSitePatterns | Ribosomal protein L15 signature. | 109 | 141 | IPR001196 | GO:0003735|GO:0005840|GO:0006412 | |
Tsu04g03074 | 148 | Gene3D | - | 58 | 148 | - | - | |
Tsu04g03074 | 148 | PANTHER | 60S RIBOSOMAL PROTEIN L27A | 1 | 148 | - | - | |
Tsu04g03074 | 148 | PANTHER | 60S RIBOSOMAL PROTEIN L27A | 1 | 148 | - | - | |
Tsu04g03074 | 148 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Tsu04g03074 | 148 | SUPERFAMILY | Ribosomal proteins L15p and L18e | 6 | 147 | IPR036227 | - | |
Tsu04g03074 | 148 | Hamap | 50S ribosomal protein L15 [rplO]. | 1 | 147 | IPR030878 | GO:0003735|GO:0006412|GO:0015934 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g03074 | Tsu-Chr4 | 38047381 | 38048036 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g03074 | 1 | 148 | Cytoplasmic Ribosomal Protein Gene Family | AT1G23290 | 83.108 | 1.43e-86 | 248 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g03074 | K02900 | - | sly:101265118 | 265.388 |