Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03068 atGGTGGATgttggaggaggaggaggaggaggaaggtTGTTGATGCTTATACTGTTATTATTCAGCTGCATTCTCAGTGCCACTGCCACTACAGATCCAACTGATGTTACTTCTATAAAGGCTATATTTCAAAGCTTGAATTCACCGCCCCAACTAGGCTGGCCTACTGCTAACGCCAATGATGATCCGTGTGGACACTCTTGGAAAGGCATTACTTGTTCAGCCAACCGTGTTACACACATTCACTTATCCAATCTTGCTCTATCCGGAACATTGTCTTACGGATTACAAGACTTAACATCGCTCACCACTCTAGACATGAGTAACAACAATCTTGTCGGAACTATACCATACCAACTTCCTCCAAATGTGCAGCGCTTaaattttgcttataacaACTTGACTGGGACAGTGCCTTACTCTATTTCTAACCTCACCTCTCTTACAGACCTGAATCTCAATCACAATCAGCTCCAGCAAGCACTGAATGTCAACTTTCAAAATCTTTCTACCCTCTCCAAATTAGACCTGTCTTTCAACTCTTTGACAGGTGACCTCCCTCAGACTATGAGCTCACTTTCAGGCATAACCACCATGTATCTACAAAACAACCAGTTTACAGGCACTATTGATAGTCTTGCTAATCTGCCTCTGAATAGTCTGAATGTAGAAAACAATAATTTCACTGGATGGATACCAGAGCGGTTGAAAAACATAGACCTTCAGATGGGTGGTAATGCGTGGAGCTCAGGACCTGCACCACCACCTCCTCCTGGGACGCCTCCATTACATAAAAGCAACCAACACCACAAATCTGGTGGTGGAAGAAGTAGCACTGGCCAACATCCCAGCAGCGACACAATCAATGAGGGCAAAAAATCTGGAATTGGGAGTGGTGGAATAGTTGGAATTGTGATCTCCATCATTTTTGTTGGGGCAATAATAGCATTCTTTTTGGTGAAGAGAAAATCCAAGAAGTCATCTTCCGATTTAGAAAAGTTGGGCAATCAGTCTACTGGTCCTCTTCCTTCAAATGAAGTGCATGAAATTACGTCTGTGCAGACTTCTTCCATGCTTGACTTGAAGAAGTTGGATACTTCTGACTCAATAAATCTCAAGCCCCCACCCATTGATCTTCATAAGTCGTTTGAGGACAACGAGTTCTCAAACAAGCCCACTATAGTCAAGAAGATTGTAACAGCTCCTGTAGATGTCCAATCATATTCTATAGCCGATCTTCAGATTACTACTGGCAGCTTCAATGTGGATCATCTTATTGATGAGGGATCTTTTGGGCGTGTGTACCGTGCTCAATTTGATGATGGAAAGGTTCTTGCAGTGAAGAAAATAGATTCATCAGTCCTTCCCAATGATTTTTCAGAAGATTTTATAGAAATAGTGTCAAACATTTCCTATTTACATCATCCAAATGTAACAGAGCTTGTAGGTTATTGCTCAGAGCATGGACAACACCTCTTAGTTTACGAGTTTCATAAAAATGGATCACTGCATGACTTCCTTCACGTGTCAGATGAATACAGTAAACCATTGATATGGAATTCCCGTGTCAAGATAGCTTTGGGGACTGCACGCGCTTTAGAGTACCTGCATGAAGTTTGTTCTCCATCAGTTGTGCATAAGAATATTAAGTCAGCCAATATATTACTTGATGCAGAGCTTAATCCTCATCTTTCAGACTGTGGATTGGCAAACTATATTCCAAATGCAGAGCAGATACTAAACCATAATGCTGGATCTGGATATGATGCATCCGAAGTTGCGATGTCTGGTCAATATACCTTTAAAAGTGATGTCTACAGCTTTGGGGTTGTCATGTTGGAACTTCTCTGTGGGCGAAAACCATTTGATAgCTCAAGGGCAAGACCGGAGCAGTCTTTGGTTCGATGGGCAACACCCCAGCTTCATGACATTGATGCGTTGGCTAAGATGGTTGATCCTTCGTTGAAAGGGCTATATCCTGTTAAATCTCTATCACGTTTTGCTGATGTTATTGCTCTTTGCGTTCAGCCGGAGCCTGAATTCAGACCACCAATGTCAGAGGTGGTTCAATCGCTGGTACGATTAGTGCAGCGAGCTAACATGAGCAGGCGGACATTCACATTTggaagtgatcatggaggatCCCTACGAGGAAGTGATGAGCCAGCTATACGAGACATCTAA 2184 0.4135 MVDVGGGGGGGRLLMLILLLFSCILSATATTDPTDVTSIKAIFQSLNSPPQLGWPTANANDDPCGHSWKGITCSANRVTHIHLSNLALSGTLSYGLQDLTSLTTLDMSNNNLVGTIPYQLPPNVQRLNFAYNNLTGTVPYSISNLTSLTDLNLNHNQLQQALNVNFQNLSTLSKLDLSFNSLTGDLPQTMSSLSGITTMYLQNNQFTGTIDSLANLPLNSLNVENNNFTGWIPERLKNIDLQMGGNAWSSGPAPPPPPGTPPLHKSNQHHKSGGGRSSTGQHPSSDTINEGKKSGIGSGGIVGIVISIIFVGAIIAFFLVKRKSKKSSSDLEKLGNQSTGPLPSNEVHEITSVQTSSMLDLKKLDTSDSINLKPPPIDLHKSFEDNEFSNKPTIVKKIVTAPVDVQSYSIADLQITTGSFNVDHLIDEGSFGRVYRAQFDDGKVLAVKKIDSSVLPNDFSEDFIEIVSNISYLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHVSDEYSKPLIWNSRVKIALGTARALEYLHEVCSPSVVHKNIKSANILLDAELNPHLSDCGLANYIPNAEQILNHNAGSGYDASEVAMSGQYTFKSDVYSFGVVMLELLCGRKPFDSSRARPEQSLVRWATPQLHDIDALAKMVDPSLKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQSLVRLVQRANMSRRTFTFGSDHGGSLRGSDEPAIRDI 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03068 727 SUPERFAMILY Protein kinase-like (PK-like) 403 692 IPR011009 -
Tsu04g03068 727 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 22 723 - -
Tsu04g03068 727 Pfam Protein tyrosine and serine/threonine kinase 423 692 IPR001245 GO:0004672|GO:0006468
Tsu04g03068 727 MobiDBLite consensus disorder prediction 707 727 - -
Tsu04g03068 727 MobiDBLite consensus disorder prediction 328 347 - -
Tsu04g03068 727 Gene3D Phosphorylase Kinase; domain 1 382 497 - -
Tsu04g03068 727 Gene3D Transferase(Phosphotransferase) domain 1 499 710 - -
Tsu04g03068 727 Gene3D Ribonuclease Inhibitor 186 250 IPR032675 -
Tsu04g03068 727 SUPERFAMILY L domain-like 32 238 - -
Tsu04g03068 727 ProSiteProfiles Protein kinase domain profile. 420 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03068 727 PRINTS Leucine-rich repeat signature 102 115 - -
Tsu04g03068 727 PRINTS Leucine-rich repeat signature 169 182 - -
Tsu04g03068 727 MobiDBLite consensus disorder prediction 272 292 - -
Tsu04g03068 727 PANTHER OS01G0253100 PROTEIN 22 723 IPR045271 GO:0004714|GO:0006468
Tsu04g03068 727 MobiDBLite consensus disorder prediction 331 347 - -
Tsu04g03068 727 Gene3D Ribonuclease Inhibitor 35 185 IPR032675 -
Tsu04g03068 727 MobiDBLite consensus disorder prediction 243 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03068 Tsu-Chr4 37967609 37973136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03068 31 705 Strubbelig Receptor Gene Family AT1G53730 64.905 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Tsu04g03068 PK_Tyr_Ser-Thr 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03068 - - gmx:100807707 1056.97