Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03042 ATGGCCAACCTTTCTGATATGATAGAATTGGATAAGAATAGTGAAGAGAGGAAAGAAGCAcaagaatttgaagatgaagaaagttTCTCATATGCTATACACCTTGCCAACTCTATTGTGCTACCAATGGCACTTCAATCTGCAGTTGAGCTTGGCGTTTTCGATGTGTTGCAAAAAGCCGGTAAAGGTGCTCAATTGTCGGCCGAGGAGATTTCGGCCCGTCTTTCATGTAACAATCCAGATGCTCCCAAAATGTTGGATCGGATTCTTGCTCTTCTTGCCTCACATGATGTGTTGAAGTGTTTGGTCTTTCAAGATCAACAAAAACTTGGATCCTTTCATAGACTTTATAGTATGGCTCCTGTTGCAAAATTCTTTGCTCCTAATTCTGATGGAGTTTCATTAGGACCATTGATGTCTCTGATTCAAGATAAGGTTTTCTTAGCTAGCTGGTCGGAGCTTAATAATGCAATTCGAGAAGGAGGTGTCGCCTTCGACAGGGTTCATGGCACACATGCCTTTGAATATCCAAGCTTGGACTCAAGGTTCAACCAAGTTTTCAATAAAGCAATGATCAATCATACCAATCTAGTTATGAAGAAGGTTCTTGAGTCTTACAAAGGTTTCAAGGACATAAAAAGGCTTGTGGATGTTGGAGGTGGTCTTGGGGTCAACATTAACTTGATCACAACTAAATATCCTCAAATAGAGGGTATCAATTTCGACTTGCCTCATGTCATTCAACATGCTCCTTCATATCCTGGAGTTGAACACGTTGGTGGAGATATGTTTGAAAGTGTGCCTAAAGGAGATGCTATCTTTATGAAGtGGATACTTCATGATTGGAGTGATGAACACTGCTTAAAGCTTTTGAAGAATTGTTATGATGCTACTCCAAATGATGGGAAGGTGATTGTTTTAGAGGCACTTATTCCAATTGTGCCTGAGAATAGTCGTGCTGCAAAGTGTACTTCCCAATTTGATGTTCTGATGATGACTCAAAACCCAGGAGGAAAAGAGCGAACTAAGCAAGAATTCATTGATTTGGCGACTAAAGTGGGATTTAGTGGCATCAGATTTGAATGTTCTGTCCGTAACTTCTGGGTTATGGAGTTCTTTAAGTAA 1125 0.3956 MANLSDMIELDKNSEERKEAQEFEDEESFSYAIHLANSIVLPMALQSAVELGVFDVLQKAGKGAQLSAEEISARLSCNNPDAPKMLDRILALLASHDVLKCLVFQDQQKLGSFHRLYSMAPVAKFFAPNSDGVSLGPLMSLIQDKVFLASWSELNNAIREGGVAFDRVHGTHAFEYPSLDSRFNQVFNKAMINHTNLVMKKVLESYKGFKDIKRLVDVGGGLGVNINLITTKYPQIEGINFDLPHVIQHAPSYPGVEHVGGDMFESVPKGDAIFMKWILHDWSDEHCLKLLKNCYDATPNDGKVIVLEALIPIVPENSRAAKCTSQFDVLMMTQNPGGKERTKQEFIDLATKVGFSGIRFECSVRNFWVMEFFK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03042 374 Gene3D - 11 126 IPR036388 -
Tsu04g03042 374 Pfam O-methyltransferase domain 151 356 IPR001077 GO:0008171
Tsu04g03042 374 PIRSF O-mtase 9 374 IPR016461 GO:0008168
Tsu04g03042 374 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 13 374 - -
Tsu04g03042 374 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 372 IPR029063 -
Tsu04g03042 374 SUPERFAMILY "Winged helix" DNA-binding domain 24 129 IPR036390 -
Tsu04g03042 374 Pfam Dimerisation domain 43 94 IPR012967 GO:0046983
Tsu04g03042 374 MobiDBLite consensus disorder prediction 1 21 - -
Tsu04g03042 374 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 374 IPR016461 GO:0008168
Tsu04g03042 374 Gene3D Vaccinia Virus protein VP39 128 374 IPR029063 -
Tsu04g03042 374 PANTHER O-METHYLTRANSFERASE 13 374 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03042 Tsu-Chr4 37610841 37614838 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03042 10 374 Monolignol Biosynthesis Gene Families AT5G54160 49.319 2.45e-134 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03042 K13066 - gmx:100803633 556.984