Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03031 ATGGATGCAATCCAAACAGAAAAAATTTATGTTGCAGTTGGTTATGATGTGGTAGATGGATTTCAAACATTGGCTTGGGCTCTCAAGAAATGGAATTCTCATCCAAATATTTCTATAATCATTTTACATGTTAAATATAATACTTCCGATGATCGTGTTTTAACACTCCTTGGAAAACTCCCTGCAAAAGGTGCAAGTGAAGAAAACCTAGAACGTATAAGGAAAAATGAGCAAAACATAATCAACAATTTGCTTTCCATGTTTATAGCTTTATGTGACAAAGTTCCAGCTGAAACATTTGAGGTTGAGAAATTTGATGAACCAATGCATAATCTAACTATAGACTTGATCCTTGGTCTTGGAATAACCAAATTGGTCATTGGATTTTCATTCATGAGGCCTTCCATGAAATCAAAAGATGTCATGAATGGATTATTCTATGTTCATCAATACAAGCCTGATTTTTGTGAGTTGTTCATAATATGTGGAGGCAAACAAGTTTCACCAAGAGTGAACAATGGTGAAATAACCATGGAGGATGATAGTGGAGTTAAGGTTGCTAAAATGaaagataaaacaaattttatagaTTGGATAGAAAGATTGTTCTGTGATAAAACCATTGATTCCAACGAAAGAGTTTCTAGTAGATCATCAACTTCCTCAACAAATTTTGAGGCACATCTTGATCAAAACCAGTGGGAATTTTATGTCCAAGAAATTAACAATTATTTTCAAGAGTTACTGTCCTTAAATTTGGAAGGAGAAAATTGTGAACaagaatttgatgatgattCATTCATTAGTTCAATTCAGTCATATGTCCAACAGCTTAAAAATTCTGATGATAAGAGTTCTGCAGGAAAATTTGAGATCCTCACATATAAACTGTATGAAGCTTATGATACAAttcaaatgaaaagaaaagaagaaaaggacAATTTGGATCGGCATGCAAAAGCTGAATGGGCTATTTATATATCCAATCGTcagGAAGAAGAACTTGAATATCTAAAAAGTGAAGAAGTGACAAAAAAGGAAGAGCTACAGAAAGAACTTAATgtagaaaaaaaacaaattaaaaaaattagaatgaaTGTTGAAGAGAGCAAACAAAAGCTTAGCTCATTGGTAGAGCAACAACTAGACCTAAACAATAAGCTTCAAGTTTCCAATGAGGAAATTTCAGAATATAAAACCAAACTTGAGAATGTAATGGCTGAAAGGACAGAGATGTTAATGGCGATTGAAGAGCTAAGTAGACAAAGGGATGTGTTTAACAAAAGGATTATGTTTTCTAGAGAAAAAGTTGACACAGAAATTAGTAATATTAGTGAGAAGAGTTTTTATTTAAGAGAGTATACTAAGGATGAGATTATCTTGGCCACCAACAACTTTTCAGAATACTTTAGGTTGAAATCTGGTGGAGATTGGAGTAATGTTTATAGAGGAAACATTAATCATTCCAATGTTGCAATCAAGATGCTTGATTCTAGTACTCTTGCCTTGTCCCAACAAGATTTCCAAGCTAAGTTGAGGTCTCTTGGCAATATTCGGCATCCTCATCTAGTTGCTGTATTGGGCTTCTGTTCTGAGCTCAAATGCTTAGTATTGGAATACATGCACAAAGGAAACTTGGAAGAAAAGCTACTTTGCAAGACAATAAGCTGGCAAGATTGCATAAGGATAGCCATAGAAGTATGTTCTGGGCTGGGCTTTCTATATTCATTTCAGCCCAGGCCCATTATTCATTGTCACATTTCTCCAACCAACATTCTCCTAGACAACAATCTTGTTGCAAAAGTAACATTTGGGTTTCATAGTTGTATTAAAGAATGTAATGTTGGGTTAGATGTGAAGGAAATAGGAGTTTTGTTGTTGCATATATTGACTGGAAGAGGAAATTGGGTGACAATTGATGATATGGAGGCCTTTTATGATGAGATTGGTGAAGAATGGCCATTGGATGTAGCAAGAGAACTTTTGGACTTAGCAATGAGGTGCATGTCCAATGTAGATATGAGTATAAGAAGAGTCATGGAAGAACTCAATGAAATCAAAAGAAAGGGTTGTGACTCCAATGAAGTGCCTAACATTTTCCTTTGCCCAATCCAAAAGATGGTAATGAGAAATCCATACATAGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAAGAATGGTTGCAATCTGGAAATGAAATATCACCCAAAAGCTTGAGGCTGAAGAATACATTACTTATTCCTAATCATAACCTCCGTTCCCTAATTCAGTATTGGCATCACAAGAGATCAGCTAatcaaattgtaaaataa 2319 0.3351 MDAIQTEKIYVAVGYDVVDGFQTLAWALKKWNSHPNISIIILHVKYNTSDDRVLTLLGKLPAKGASEENLERIRKNEQNIINNLLSMFIALCDKVPAETFEVEKFDEPMHNLTIDLILGLGITKLVIGFSFMRPSMKSKDVMNGLFYVHQYKPDFCELFIICGGKQVSPRVNNGEITMEDDSGVKVAKMKDKTNFIDWIERLFCDKTIDSNERVSSRSSTSSTNFEAHLDQNQWEFYVQEINNYFQELLSLNLEGENCEQEFDDDSFISSIQSYVQQLKNSDDKSSAGKFEILTYKLYEAYDTIQMKRKEEKDNLDRHAKAEWAIYISNRQEEELEYLKSEEVTKKEELQKELNVEKKQIKKIRMNVEESKQKLSSLVEQQLDLNNKLQVSNEEISEYKTKLENVMAERTEMLMAIEELSRQRDVFNKRIMFSREKVDTEISNISEKSFYLREYTKDEIILATNNFSEYFRLKSGGDWSNVYRGNINHSNVAIKMLDSSTLALSQQDFQAKLRSLGNIRHPHLVAVLGFCSELKCLVLEYMHKGNLEEKLLCKTISWQDCIRIAIEVCSGLGFLYSFQPRPIIHCHISPTNILLDNNLVAKVTFGFHSCIKECNVGLDVKEIGVLLLHILTGRGNWVTIDDMEAFYDEIGEEWPLDVARELLDLAMRCMSNVDMSIRRVMEELNEIKRKGCDSNEVPNIFLCPIQKMVMRNPYIAADGFSYELEAIEEWLQSGNEISPKSLRLKNTLLIPNHNLRSLIQYWHHKRSANQIVK 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03031 772 ProSiteProfiles Protein kinase domain profile. 467 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03031 772 Gene3D Transferase(Phosphotransferase) domain 1 541 695 - -
Tsu04g03031 772 PANTHER OS02G0152300 PROTEIN 4 764 - -
Tsu04g03031 772 CDD RING-Ubox_WDSUB1_like 700 738 - -
Tsu04g03031 772 Pfam Protein tyrosine and serine/threonine kinase 476 608 IPR001245 GO:0004672|GO:0006468
Tsu04g03031 772 SUPERFAMILY Protein kinase-like (PK-like) 443 670 IPR011009 -
Tsu04g03031 772 Pfam U-box domain 696 765 IPR003613 GO:0004842|GO:0016567
Tsu04g03031 772 Coils Coil 339 422 - -
Tsu04g03031 772 SMART Ubox_2 699 761 IPR003613 GO:0004842|GO:0016567
Tsu04g03031 772 Gene3D Phosphorylase Kinase; domain 1 433 540 - -
Tsu04g03031 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 770 IPR013083 -
Tsu04g03031 772 SUPERFAMILY RING/U-box 695 765 - -
Tsu04g03031 772 ProSiteProfiles U-box domain profile. 695 768 IPR003613 GO:0004842|GO:0016567
Tsu04g03031 772 PANTHER U-BOX KINASE FAMILY PROTEIN 4 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03031 Tsu-Chr4 37445672 37455184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03031 5 767 U-box Gene Family AT5G65500 42.293 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tsu04g03031 PK_Tyr_Ser-Thr 6.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03031 - - gmx:100795815 924.465