Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03030 ATGAATCTGTTCTGTTCAACATGCTTTCATCTTTTGCTTCTCTTTGCTTCTACACTATGTCTCCAACATAAGAATACTGCTACTGCCTTAGGAAACGATACAGACCAATTGTCATTACTAAGATTCAAAGAAGCAATAGTAGATGACCCTTTTGGTATCTTGAAATCTTGGAATACTTCAACTTACTTTTGCAACTGGCATGGAGTCACATGCAGCCTCAAACATCAAAGGGTGACTTCTTTGAACCTACAAGGATATGACTTACTTGGATTCATACCACCTGAAATTGGAAACCTCACCTTTCTGAGGTATGTTAACCTTCAAAACAACAGCTTCTATGGTGAAATCCCACAAGAAATAGGTCATTTGTTTAGGCTGAAAGAGCTTTATCTGACAAATAACACATTGAAGGGTCAAATTCCAACCAACTTGTCTAGTTGTTCTGAACTCAGGAGCTTGAGTTTAACAGGAAACAGGCTAGTTGGAAAAATACCAAAGGAGCTTGGTTATCTAACTAAGCTACAAGTTCTATCAATTGGTATGAACAATTTGAGTGGTGAAATCCCTGCATCTATAGGAAACCTTTCATCTCTTAGTATTCTAATTTTAGGAATCAATAATTTGAATGGAAAATTACCTGAAGAGATAGGTCATTTGAGAAATTTGACACATATCTCTATTGCATCAAACAAACTATATGGTATGCTTCCTTTTACATTATTTAATATGTCATCTCTCACTTACTTTTCAGCTGGTGTCAATCAATTTAATGGCACTTTACCTGCCAACATGTTCCTCACACTCCCTAATCTCCAACAATTTGGCATTGGTATGAATAAGATCTCGGGTCCTATCCCGATTTCGATATCAAATGCGACACAGTTGTTGTTATTTAACATCCCTAGGAACAACTTTGTTGGACAAGTTCCAACTGGAATAGGAAATCTAAAAGATATATGGTCCATTGCTATGGAATATAATCATCTAGGGAGTAATTCATCCAAGGACTTAGATTTCTTGACATCTTTGACAAACTGCACAAATTTAAAAGTGTTAGATTTAAATCTAAACAACTTTGGTGGTTCTTTACCAAACTCTATAGCTAACTTTTCAGatcaattgaatcaattttatattggtGGAAATCAGATTACTGGAAATATTCCTGCAGGATTAGGAAATCTCGTCAACTTGATCGGCTTGGACTTGGAGTTCAACCTTCTCACAGGCTCCATTCCAACTTCATTCGGAAATTTTGAAAAGATACAATCATTAACATTGAATGTAAACAAACTTTCAGGAaagattccatcatcacttggcAACCTTAGTCAGGTATTTCAACTGGACTTATCAAACAATATGCTAGAAGGAAACATTCCTCCTAATATTGGCAATTGCCAAATGTTGCAATACTTAGACCTTTCAAATAACCACCTTAGTGGGACCATTCCTTGGCAAGTCATTGGTCTTCCTTCATTGTCAATGTTACTCAACTTATCCCATAATTCATTACATGGAAGCCTACCCTTTGAAATTGGCAACCTGAAAAGCATCAATAAGTTGGATGCTTCTAAAAATTTTCTGTCTGGTGAGATTCCTGCAACAATCGGACAATGCATAAGTTTGGAATACCTTAACTTACAAGGGAATTTTTTCCAGGGAGCCATGCCTTCATCTTTGGCTTCATTGAAAGGCCTTCAATATTTAGATTTGTCACAAAACAACTTTTCAGGGTCAATTCCAGAAGGTCTAGAGAGTATTCCTGTTCTACAGTACTTGAATATTTCTTTTAACAGGTTGAATGGTGAAGTACCAACAGAAGGTGTGTTTAGAAATGAAAGTGCAATATCTGTGAAAAACAACAGTGAACTTTGTGGTGGTATCACAGGGTTACATCTCCAACCATGTGTTGtcaaagaaaaggaaaacaaaaaccAGAAGGCGTggaaaataatagtaataataatttgtgtagttggttttcttctattattatttttctctattgcagtattttggaagaaaaaatcaCACTGGAGAACTTCCAAAGTTCCATCAACAATAGATCACCATGCAAAGATCTCATACAAAACACTTTATCAAGCAACAAATGGATTCTCTTCCAACAACTTGATAGGGTCTGGTGGTTTCGGATTTGTATATAAAGGAATTCTGGAGTCAGAAGAAAGAGTTGTTGCTATAAAGGTCTTGAACCTTCAAGTCAAGGGAGCTCACAAGAGTTTCATCGCTGAATGTAATGCACTCAAAAGTATCCGTCATAGGAATCTTGTCAAGATTCTAACATGTTGCTCAAGTATGGATTACAATGGTAATGAGTTCAAAGCTTTAGTTTTTGAGTACATGGAAAACGGAAGCTTAGATAAATGGCTACCTCACGACTCCGAAATCAGAGATCAACCAAGTTTGAACCTTCTTCAAAGACTAAATATTCTTACAGATGTTGCTTCTGCAATACACTATCTACACTATGAATCTGAGCAGCCAATCATTCACTGTGATTTAAAGCCAAGCAATATCCTTCTTCATAATGACATGGTTGCTCATGTTAGTGATTTTGGACTAGCAAGAATTCTATGTGCCATCAATGGTATCTCTGATCTTCAAACTAGCACAATTGGATTCAATGGAACTATTGGATATGCTCCTCCAGAATATGGAGTGGGAAGTCAAGTTTCAGCACAGGGTGATGTATATAGCTTTGGAATTCTTTTACTGGAAATACTAACAAGAAGAAAACCAACAGATGAAATGTTTACAAATGGTATGAATCTTTATTCTTTTGTCAAGGTTTCACTGCCAGATAAACTCCTAGAGATAGTAGACTCAACTCTACTCCCAAGAGAATTGAAACAAACAACTGTACCAACAATAGCagcagaagaagaaaataatagtGATCAGAATCTAAGCCATTTGCATCCTAATGATTTGAAGCAGTGTTTAGTTGAACTCTTTTATATTGGACTTGCTTGTTCGGCAGAGTTACCGAGAGAAAGAATAAATATGAAGGATGTCACCAGGGAGCTAGATGTAATCAGAAGTGCTCTTTCTAGGAAGTAG 3084 0.3479 MNLFCSTCFHLLLLFASTLCLQHKNTATALGNDTDQLSLLRFKEAIVDDPFGILKSWNTSTYFCNWHGVTCSLKHQRVTSLNLQGYDLLGFIPPEIGNLTFLRYVNLQNNSFYGEIPQEIGHLFRLKELYLTNNTLKGQIPTNLSSCSELRSLSLTGNRLVGKIPKELGYLTKLQVLSIGMNNLSGEIPASIGNLSSLSILILGINNLNGKLPEEIGHLRNLTHISIASNKLYGMLPFTLFNMSSLTYFSAGVNQFNGTLPANMFLTLPNLQQFGIGMNKISGPIPISISNATQLLLFNIPRNNFVGQVPTGIGNLKDIWSIAMEYNHLGSNSSKDLDFLTSLTNCTNLKVLDLNLNNFGGSLPNSIANFSDQLNQFYIGGNQITGNIPAGLGNLVNLIGLDLEFNLLTGSIPTSFGNFEKIQSLTLNVNKLSGKIPSSLGNLSQVFQLDLSNNMLEGNIPPNIGNCQMLQYLDLSNNHLSGTIPWQVIGLPSLSMLLNLSHNSLHGSLPFEIGNLKSINKLDASKNFLSGEIPATIGQCISLEYLNLQGNFFQGAMPSSLASLKGLQYLDLSQNNFSGSIPEGLESIPVLQYLNISFNRLNGEVPTEGVFRNESAISVKNNSELCGGITGLHLQPCVVKEKENKNQKAWKIIVIIICVVGFLLLLFFSIAVFWKKKSHWRTSKVPSTIDHHAKISYKTLYQATNGFSSNNLIGSGGFGFVYKGILESEERVVAIKVLNLQVKGAHKSFIAECNALKSIRHRNLVKILTCCSSMDYNGNEFKALVFEYMENGSLDKWLPHDSEIRDQPSLNLLQRLNILTDVASAIHYLHYESEQPIIHCDLKPSNILLHNDMVAHVSDFGLARILCAINGISDLQTSTIGFNGTIGYAPPEYGVGSQVSAQGDVYSFGILLLEILTRRKPTDEMFTNGMNLYSFVKVSLPDKLLEIVDSTLLPRELKQTTVPTIAAEEENNSDQNLSHLHPNDLKQCLVELFYIGLACSAELPRERINMKDVTRELDVIRSALSRK 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03030 1027 Pfam Leucine rich repeat 542 601 IPR001611 GO:0005515
Tsu04g03030 1027 PRINTS Leucine-rich repeat signature 470 483 - -
Tsu04g03030 1027 PRINTS Leucine-rich repeat signature 564 577 - -
Tsu04g03030 1027 Pfam Leucine Rich Repeat 470 486 IPR001611 GO:0005515
Tsu04g03030 1027 ProSitePatterns Protein kinases ATP-binding region signature. 713 736 IPR017441 GO:0005524
Tsu04g03030 1027 SUPERFAMILY Protein kinase-like (PK-like) 680 1017 IPR011009 -
Tsu04g03030 1027 PANTHER LRR RECEPTOR-LIKE KINASE 21 1024 - -
Tsu04g03030 1027 Gene3D Ribonuclease Inhibitor 331 638 IPR032675 -
Tsu04g03030 1027 SMART LRR_typ_2 219 243 IPR003591 -
Tsu04g03030 1027 SMART LRR_typ_2 171 195 IPR003591 -
Tsu04g03030 1027 SMART LRR_typ_2 443 467 IPR003591 -
Tsu04g03030 1027 SMART LRR_typ_2 123 147 IPR003591 -
Tsu04g03030 1027 SMART LRR_typ_2 564 587 IPR003591 -
Tsu04g03030 1027 SMART LRR_typ_2 395 418 IPR003591 -
Tsu04g03030 1027 SMART LRR_typ_2 588 613 IPR003591 -
Tsu04g03030 1027 PANTHER OS04G0122200 PROTEIN 21 1024 - -
Tsu04g03030 1027 SUPERFAMILY L domain-like 374 627 - -
Tsu04g03030 1027 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Tsu04g03030 1027 Pfam Protein kinase domain 709 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03030 1027 Gene3D Phosphorylase Kinase; domain 1 669 788 - -
Tsu04g03030 1027 Gene3D Ribonuclease Inhibitor 34 149 IPR032675 -
Tsu04g03030 1027 Gene3D Ribonuclease Inhibitor 265 323 IPR032675 -
Tsu04g03030 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
Tsu04g03030 1027 SMART serkin_6 707 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03030 1027 Gene3D Ribonuclease Inhibitor 153 264 IPR032675 -
Tsu04g03030 1027 ProSiteProfiles Protein kinase domain profile. 707 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03030 1027 SUPERFAMILY L domain-like 34 329 - -
Tsu04g03030 1027 Gene3D Transferase(Phosphotransferase) domain 1 789 1027 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03030 Tsu-Chr4 37439943 37443528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03030 32 1021 Receptor kinase-like Gene Family AT3G47570 46.008 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu04g03030 Pkinase 7.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03030 - - qsu:112010890 1113.6