Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03029 ATGGAGAGAATAGAGAGAAGGAGCAAGAAGgatcaagaaaagaaagaaaagagaacaagaaattttgttgatttaatAACAGGTATTAACAATAACACGCCGAAAAAAGCGTTTGCTCCTCAAGcaaatgatcaaaacaacaatgaTTTACCATTAGGGTCACCACCATCACCAAGGCATGTATTTGAGGTATCGATATCAGATTGTGAAAGCACGGAGAGCAGCAACTACAACAGTTGTGCCTCAACGCCTCAACGAGCACCACCGGTACCACAACATGGAGgaaaatcatcatcaccaaGAGAAGATGGAGGAGGGTACCAATACCAATGGAGGAATATGATTGAGGGATTGAGGTTTAAGTCTGTGAGGAGATTCTCTACCATTCCTTTGCTTGCTACTAGCTATGAAAGTTCTAGGAGAAGTTTGAGGAACAAATTGGCTCGTATAAGAAcggatgatgatgagaattatTTTGATGCTGCTATTGATTTTGATGGTATTACAAAGCCTTCTTGGAGAAATTTTAGTTATGAAGATCTTGCTGCTGCAACTGATAATTTCAATCCTGACAACATGATTGGAAAAGGTGGTCATGCAGAAGTGTATAAAGGACGGTTACCTGATGGAACAGTTGTAGCAGTAAAGATGCTAGTAAGGGACGAAAAAGATGTTGGAGACAAAGCTGGTGATTTCTTGTCGGAGCTTGGAATCATTGCTCACATTAACCATCCAAATTCAACACGTCTCATTGGTTTTGGAATTGATCGTGGACTCTACTTTGTTCTACAATTTGCATCTCATGGAAGCCTTGCCTCTTTGCTCTTTGGTTCTGAATGTTTGGAATGGAAGACAAGGTTCAAGGTAGCACTTGGAGTAGCCAGAGGATTACAATATCTCCATGAAGATTGTCCAAGAAGAATCATTCACAGAGACATCAAAGCCTCAAACATATTACTCAACCAAGATGATGAACCTGAGATTTCAGATTTTGGATTGGCAAAGTGGCTACCAGATAAATGGGCACATCATGTTGTTTTTCCAATAGAAGGCACATTTGGGTATTTGGCTCCAGAATATTTCATGCATGGACTTGTGGATGAGAAGACTGATGTATTTGCATTTGGAGTATTGTTACTTGAGCTCATGACAGGTCGTCGTGCAGTCGATTCAAATAGCAGACAGAGTCTTGTGATTTGGGCTAAACCACTATTGGATGCAAAAGCAGTGAAAGATATAGTAGATCCAAGATTAGAAGAACAATATAATCCAACTGAAATGATGCTTGCCATGGCAGCAGCTTCCATGTGTATCCACCACATGTCCTCTAAAAGGCCATACATGAATCagGTTGTGCTACTATTGAATGGAGAAGAGGTGGCTATGGACCTGACTCAAAAATCAATAGAACCAAGGTCACTCTTGTTAGATGCTTGTGATTTAGAAGATTATACTTGTTCTAGTTATTTGAATGATCTCAATCGTCACAAAGAATTAATCATGGAGTAA 1509 0.3757 MERIERRSKKDQEKKEKRTRNFVDLITGINNNTPKKAFAPQANDQNNNDLPLGSPPSPRHVFEVSISDCESTESSNYNSCASTPQRAPPVPQHGGKSSSPREDGGGYQYQWRNMIEGLRFKSVRRFSTIPLLATSYESSRRSLRNKLARIRTDDDENYFDAAIDFDGITKPSWRNFSYEDLAAATDNFNPDNMIGKGGHAEVYKGRLPDGTVVAVKMLVRDEKDVGDKAGDFLSELGIIAHINHPNSTRLIGFGIDRGLYFVLQFASHGSLASLLFGSECLEWKTRFKVALGVARGLQYLHEDCPRRIIHRDIKASNILLNQDDEPEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELMTGRRAVDSNSRQSLVIWAKPLLDAKAVKDIVDPRLEEQYNPTEMMLAMAAASMCIHHMSSKRPYMNQVVLLLNGEEVAMDLTQKSIEPRSLLLDACDLEDYTCSSYLNDLNRHKELIME 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03029 502 SMART serkin_6 188 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03029 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Tsu04g03029 502 MobiDBLite consensus disorder prediction 1 22 - -
Tsu04g03029 502 SUPERFAMILY Protein kinase-like (PK-like) 172 457 IPR011009 -
Tsu04g03029 502 ProSiteProfiles Protein kinase domain profile. 188 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03029 502 Pfam Protein kinase domain 191 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03029 502 MobiDBLite consensus disorder prediction 24 53 - -
Tsu04g03029 502 PANTHER OS08G0249100 PROTEIN 1 502 - -
Tsu04g03029 502 ProSitePatterns Protein kinases ATP-binding region signature. 194 216 IPR017441 GO:0005524
Tsu04g03029 502 MobiDBLite consensus disorder prediction 1 61 - -
Tsu04g03029 502 MobiDBLite consensus disorder prediction 73 107 - -
Tsu04g03029 502 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 1 502 - -
Tsu04g03029 502 Gene3D Transferase(Phosphotransferase) domain 1 267 471 - -
Tsu04g03029 502 Gene3D Phosphorylase Kinase; domain 1 163 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03029 Tsu-Chr4 37416527 37419696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03029 149 478 Trihelix Transcription Factor Family AT5G38560 40.116 3.45e-69 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Tsu04g03029 Pkinase 2.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03029 - - gmx:100812793 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01339 05 12218616 12225001 Tsu04g03029 04 37416527 37419696 PCT