Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03027 ATGGATTTGtcagaaaatgaaaagaagatCATACTAGCAGTGCCGAAACTCGAAGGTTTTGGTGAGAGGAGTCTTAAACCGattgttgaaattcaaatgggtTCTACTCCTGCTGTTAACAACTTCGGTCCTGAGTTGGATTTCTTGGATTTGAACAAAAAAACTCGTTCGATAGGTACCGAGTTAGCTGAGTCTTCCAAAGATGTTGTGAACAAAAGTATTGCTACTCATACCATTGGCCAACGAACTTCAATCTACAGAGGAGTCACAAAGCACAGATGGACGGGTAGATATGAAGCACATCTATGGGACAACAGCTGTAAACAAGAGGGTCAGGTCAGGAAAGGGCGTCAAgGTGGGTATGATAAGGAAGAAAATGCAGCAAGAGCTTATGATTTAGCAGCGCTCAAGTACTGGGGACTAGGAGCTACCACAAATTTTcctGTTTCCCATTATGCAAAGGAATTGGAGGAGATGAAAGATGTAGGAAACCAAGAATTTGTTGCTTCACTGCGAAGGAAAAGCACCGGTTTTTCTAGGGGCGCTTCCATATACCGGGGTGTTACaagGCACCATCAACAGAGTAAATGGCAAGCACGGATTGGCCGAGTTGCTGGAAACAAAGATCTGTACTTGGGAACATTTGCAACTGAAGTGGAAGCTGCAGAAGCATACGACATTGCTGCCATAAAGTTTAGAGGTGCAAATGCTGTAACCAATTTTGAGGCGAGTAGATACAATATGAGAGCTATATCGCAGACTACTCTTCCAGTTAGGGGGGAAGCAAAACGCTTGAAACCTTCTCAACAATTAGAGATCAATTTTCTGCCAATTGCTTCTTCTGCACCGTATGGTTCTGCAACACAATATTTCCCCAACAATCACTTCCGCCATTTTAATCCTCCTACCAATGAAGAAAGTAGCACAGCAGAGTCTGCTCCAACTACAACCAATGCAACAGCTGAGTTATTCCTTTGGCCCCGTCAGTCCCGTTGA 996 0.4217 MDLSENEKKIILAVPKLEGFGERSLKPIVEIQMGSTPAVNNFGPELDFLDLNKKTRSIGTELAESSKDVVNKSIATHTIGQRTSIYRGVTKHRWTGRYEAHLWDNSCKQEGQVRKGRQGGYDKEENAARAYDLAALKYWGLGATTNFPVSHYAKELEEMKDVGNQEFVASLRRKSTGFSRGASIYRGVTRHHQQSKWQARIGRVAGNKDLYLGTFATEVEAAEAYDIAAIKFRGANAVTNFEASRYNMRAISQTTLPVRGEAKRLKPSQQLEINFLPIASSAPYGSATQYFPNNHFRHFNPPTNEESSTAESAPTTTNATAELFLWPRQSR 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03027 331 CDD AP2 183 244 IPR001471 GO:0003700|GO:0006355
Tsu04g03027 331 PRINTS Ethylene responsive element binding protein signature 224 244 IPR001471 GO:0003700|GO:0006355
Tsu04g03027 331 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Tsu04g03027 331 SUPERFAMILY DNA-binding domain 183 243 IPR016177 GO:0003677
Tsu04g03027 331 SUPERFAMILY DNA-binding domain 84 150 IPR016177 GO:0003677
Tsu04g03027 331 ProSiteProfiles AP2/ERF domain profile. 184 242 IPR001471 GO:0003700|GO:0006355
Tsu04g03027 331 MobiDBLite consensus disorder prediction 298 320 - -
Tsu04g03027 331 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 63 278 - -
Tsu04g03027 331 Pfam AP2 domain 184 234 IPR001471 GO:0003700|GO:0006355
Tsu04g03027 331 Pfam AP2 domain 85 140 IPR001471 GO:0003700|GO:0006355
Tsu04g03027 331 ProSiteProfiles AP2/ERF domain profile. 85 148 IPR001471 GO:0003700|GO:0006355
Tsu04g03027 331 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 63 278 - -
Tsu04g03027 331 Gene3D AP2/ERF domain 184 243 IPR036955 GO:0003700|GO:0006355
Tsu04g03027 331 Gene3D AP2/ERF domain 85 150 IPR036955 GO:0003700|GO:0006355
Tsu04g03027 331 CDD AP2 84 150 IPR001471 GO:0003700|GO:0006355
Tsu04g03027 331 SMART rav1_2 184 248 IPR001471 GO:0003700|GO:0006355
Tsu04g03027 331 SMART rav1_2 85 154 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03027 Tsu-Chr4 37409788 37412256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03027 78 272 AP2-EREBP Transcription Factor Family AT1G51190 77.000 6.00e-106 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu04g03027 AP2 3.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03027 K09285 - gmx:100777168 352.058