Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03008 atgatgaagatgaatgtGTTGAGTAAGAAGAACAAAAATGTTATGTTGTTTTGGTGGTTTGGAATGATTGTTCAACTTTCTTTCTTGCTATGTGGTGATTCTGAGAAAACATCATTaagAGGAAGTTCAAAGATTATTAATGGCATGGGAACATCATCTATAGTCAAGTTGAATACAGAAGAAGACCAACAGCAGTTGGTTGTTGACAATGGCATTGTTTCTGTGACATTATCAAGACCAGAAGGGTACATCCTTGGAATATCGTATAATGGAATTGACAACATTCTTGACACTAAACACGAAGAACTAGATAGAGGgtACTTCGACGTTGTTTGGAATGAACCAGAAAAGCCTGGTAATTTCCAGAGAGTCCATGGGACAAACTTTTCAGTTATAGCAGCTGATGAGAATATGGTGGAGCTTTCATTTTTAAGATCATGGAAATCTTCCATGATGGGCACAGATGTCCCTTTTAACATAGACAAAAGATACATTTTCAGAAGTGGTGATTCTGGATTTTATTCGTACGTAATATTTGATCGCCCTGAAGGAATGCCAGCCGTTGAGGTTGATCAAATTAGATATGTTTACAAACTCGATGAAGACAGATTCAAGTACATGGCATTATCTGATACAAGGCAAAGAAGCATGCCATCAATGAAAGATAGAGATACAGGTCAAGTTCTAGCTTACAAAGAAGCAGTTCTATTAACTAAACCAAGTAACCCAGAATTTAGAGGAGAGGTGGATGATAAATATCAATACTCATGTGAGAACACAGATAACACTGTTCATGGATGGATTAGTTTTGATTCTTCTGATGCACCCCCCATTGGATTTTGGATGATAACACCAAGTAATGAGTTTCGCAATGGTGGGCCCACTAAGCAAGATCTTACTTCTCATGTTGGGCCCTACACACTCTCGaTGTTTGTGAGCACCCACTATGCTGGCAAGGAAGTAACCATGGCATTTCAAGATGGAGAGACTTATAAAAAGGTTTTTGGTCCTGTATTTGTCTACCTTAACACTGATTCAAAAGAGAATGATAAACTATCTCTCTGGTCAGATGCTGTACAACAGTTGTCTAAGGAAGTCCAAAATTGGCCTTATGATTTTATTCAATCACAAGATTACTTTCCACCCAATCAAAGGGGAGCAGTATTTGGAAGATTATTAGTTCAAGATAGGTACTTCAAAGGAGGAAGATTTCAATGTACTAATGCTTATTTGGGTCTAGCTTTGCCTGGAGATGCAGGTTCATGGCAGAGAGAAAGCAAGGGCTATCAATTCTGGACTCGAGCTGATGCCAAAGgatactttaaaataaataatgttgtGCCAGGTGATTATAATTTGTATGGTTGGGTCCTTGGATTTATTGGTGATTACAAATATAATGGTACAATAACCATCGCCCCAGGAGGAATCATAAACTTAAATTCACTTATATATAATCCTCCAAGAAATGGACCAACCATTTGGGAAATTGGGATCCCAGATCGTTCAGCTTCGGAATTTCATGTACCTGATCCGTACCCTAGTCTCATGAACAAATTATACGTCGAACAACGCAAAGACAAGTTTAGACAATATGGATTGTGGGAACGTTACACTGATATGTATCCGGATGATGATCTTGTTTACACCGTGGGTGTTAACAAGTATAGGGATTGGTTTTATGCTCAAGTTACAAGAAGCACAGAAAATAAGACATATGAGCCAACAACATGGCAGATTATATTTGATCATCAACATGACATAATGAGTGGAAACTACACGCTACAACTAGCCTTGGCTAGTGCTGCTGATGCTGACCTACAGGTTCGGTTCAATGACCCTAGCATATATCCACCACACTTTGCGACAGGGCACATAGGAGGAGACAATGCCATAGCAAGGCATGGAATTCATGGATTGTATTGGTTGTTCACCATTGATGTACCAAGTAATCTTCTTGTGAAAGGACAGAATATCATCTATCTGAGACAATCAAAAGCCATTAATCAATTTCAAGGAGTTATGTATGATTATATCCGTTTAGAACACCCACCAACAACTTGA 2064 0.3798 MMKMNVLSKKNKNVMLFWWFGMIVQLSFLLCGDSEKTSLRGSSKIINGMGTSSIVKLNTEEDQQQLVVDNGIVSVTLSRPEGYILGISYNGIDNILDTKHEELDRGYFDVVWNEPEKPGNFQRVHGTNFSVIAADENMVELSFLRSWKSSMMGTDVPFNIDKRYIFRSGDSGFYSYVIFDRPEGMPAVEVDQIRYVYKLDEDRFKYMALSDTRQRSMPSMKDRDTGQVLAYKEAVLLTKPSNPEFRGEVDDKYQYSCENTDNTVHGWISFDSSDAPPIGFWMITPSNEFRNGGPTKQDLTSHVGPYTLSMFVSTHYAGKEVTMAFQDGETYKKVFGPVFVYLNTDSKENDKLSLWSDAVQQLSKEVQNWPYDFIQSQDYFPPNQRGAVFGRLLVQDRYFKGGRFQCTNAYLGLALPGDAGSWQRESKGYQFWTRADAKGYFKINNVVPGDYNLYGWVLGFIGDYKYNGTITIAPGGIINLNSLIYNPPRNGPTIWEIGIPDRSASEFHVPDPYPSLMNKLYVEQRKDKFRQYGLWERYTDMYPDDDLVYTVGVNKYRDWFYAQVTRSTENKTYEPTTWQIIFDHQHDIMSGNYTLQLALASAADADLQVRFNDPSIYPPHFATGHIGGDNAIARHGIHGLYWLFTIDVPSNLLVKGQNIIYLRQSKAINQFQGVMYDYIRLEHPPTT 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03008 687 CDD RGL4_N 65 350 - -
Tsu04g03008 687 Gene3D - 490 682 - -
Tsu04g03008 687 Gene3D - 57 361 IPR014718 GO:0030246
Tsu04g03008 687 SUPERFAMILY Starch-binding domain-like 380 482 IPR013784 GO:0030246
Tsu04g03008 687 CDD RGL4_M 384 483 IPR029413 -
Tsu04g03008 687 Pfam Rhamnogalacturonate lyase family 54 249 IPR010325 -
Tsu04g03008 687 SUPERFAMILY Galactose mutarotase-like 57 350 IPR011013 GO:0003824|GO:0005975|GO:0030246
Tsu04g03008 687 Gene3D - 382 482 - -
Tsu04g03008 687 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 686 - -
Tsu04g03008 687 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 686 - -
Tsu04g03008 687 Pfam Polysaccharide lyase family 4, domain III 493 681 IPR029411 -
Tsu04g03008 687 Pfam Polysaccharide lyase family 4, domain II 408 478 IPR029413 -
Tsu04g03008 687 CDD RGL4_C 495 682 - -
Tsu04g03008 687 SUPERFAMILY Galactose-binding domain-like 490 682 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03008 Tsu-Chr4 37166783 37176510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03008 53 684 Polysaccharide Lyase AT1G09890 54.088 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03008 K18195 - gmx:100776664 1049.27