Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03004 ATGAAAGCCGTTAATTCTTCGCAGACTGGTGACGGTTTATCGTTTTTCATCGCTCCTTTTCAATCGGAAATCCCGATGAACTCCTCGGGTGGTTACCTTGGTTTATTCAGTGAGGACTCTGCATTAAACACTAGCAAAAACCAAATAGTAGCTGTTGAGTTTGATAGCTTTTCTAATGATTGGGATCCAAAATTTGATCATGTTGGAATCAATGTTAATTCGATTCAATCGGTTCAAAATGTTTCTTGGAAGACTGCTAACATCATGAAAAACGGTTCCGTTGCAAATGCTTGGATTACATAtaactcaacaacaaaaaaccttAATGTTTTTCTTACTTATGCTAAGAATCCAACTTTTCAGGGAAACTCTAGTCTTTCATATGTTATTGATTTGAGTGAAGTTTTACCTGAATATGTTAGGGTTGGTTTTTCAGCTGCTACTGAAAAATGGGGCACCAAAATTATAAGTTGCACCCAAAATCTCGGAGACGGCCCTGTTGTTGTGTACAAATCAAGTTTATCTTATGGTCGTCAAGTGGTAGCGAAAGTAATAAATGAGTCAAAGGGAAATGGAGAAGAATTCATAAATGAAGTTGCTAGCATTAGTAGAACATCACACATGAACGTTGTGTCACTTTTAGGCTTTAGTTATGAGGTGAACAAAAGGGCCCTAATATATGAATTGATGCCCAAAGGATCATTGGATAAGTTCATCTACAAAAGAGAGTTTACTAATGCtatttgtgattttgattggAACACTTTGTTCCAAATTGCAATTGACATTGCTACAGGTCTAGAGTACTTGCATGATAGATGTGGTTCAAGGATTCTGCATCTTGATATAAAGCCTCAAAACATTCTTTTGGATGAAGATTTTTGcccaaaaatttcaaattttggacTAGCTAACATATGCCAAAGGAAGGATAGTTTTATTTCAATACTAGGGATAAGAGGAACTATAGGATATATGGCGCCAGAAGTATTTAGTAGAGCATTTGGTGGATTTTTGTATAAATCTGATGTATATAGTTATAGCATGTTGATGCTTGAAATGATTGGAGGAAGAAAGAGCTATGACATCGGAGGCTCATGTACTTCTGAAATGTACTTCCTAGACTGGATTTATAAAGATCTAGAGCAAGGAAATACTCTTTTGAATTGTTTGACAATCTCAGAGGAAGAAAATGATATAGCTAGAAAGATTACTTTGGTGAGTGGTGCATTCAAACGAATCCATCAGATAGACCACCAATGA 1263 0.3452 MKAVNSSQTGDGLSFFIAPFQSEIPMNSSGGYLGLFSEDSALNTSKNQIVAVEFDSFSNDWDPKFDHVGINVNSIQSVQNVSWKTANIMKNGSVANAWITYNSTTKNLNVFLTYAKNPTFQGNSSLSYVIDLSEVLPEYVRVGFSAATEKWGTKIISCTQNLGDGPVVVYKSSLSYGRQVVAKVINESKGNGEEFINEVASISRTSHMNVVSLLGFSYEVNKRALIYELMPKGSLDKFIYKREFTNAICDFDWNTLFQIAIDIATGLEYLHDRCGSRILHLDIKPQNILLDEDFCPKISNFGLANICQRKDSFISILGIRGTIGYMAPEVFSRAFGGFLYKSDVYSYSMLMLEMIGGRKSYDIGGSCTSEMYFLDWIYKDLEQGNTLLNCLTISEEENDIARKITLVSGAFKRIHQIDHQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03004 420 Gene3D Transferase(Phosphotransferase) domain 1 231 408 - -
Tsu04g03004 420 ProSitePatterns Legume lectins beta-chain signature. 50 56 IPR019825 -
Tsu04g03004 420 Gene3D - 1 161 - -
Tsu04g03004 420 PANTHER RUST RESISTANCE KINASE LR10-RELATED 29 408 IPR045874 GO:0004672
Tsu04g03004 420 Pfam Legume lectin domain 5 152 IPR001220 GO:0030246
Tsu04g03004 420 Pfam Protein kinase domain 161 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03004 420 SMART serkin_6 156 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03004 420 SUPERFAMILY Concanavalin A-like lectins/glucanases 6 154 IPR013320 -
Tsu04g03004 420 CDD lectin_legume_LecRK_Arcelin_ConA 1 148 IPR001220 GO:0030246
Tsu04g03004 420 SUPERFAMILY Protein kinase-like (PK-like) 168 376 IPR011009 -
Tsu04g03004 420 Gene3D Phosphorylase Kinase; domain 1 162 230 - -
Tsu04g03004 420 ProSiteProfiles Protein kinase domain profile. 156 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03004 420 ProSitePatterns Legume lectins alpha-chain signature. 136 145 IPR000985 -
Tsu04g03004 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Tsu04g03004 420 PANTHER TYROSINE KINASE FAMILY PROTEIN 29 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03004 Tsu-Chr4 37092061 37098712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03004 168 408 Receptor kinase-like Gene Family AT5G38280 55.510 2.42e-87 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu04g03004 Pkinase 1.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03004 - - mtr:MTR_1g115485 402.134