Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03003 ATGGCTATCTGCACATATGCTTACCACtataatcaaaccaaaaaaaccTTAATTTCAATGTTAATCATAATTTTCACTTTGTTCTATGCATTCTTCAACCCTGCAGCTGCAAAATCACTTTCCTTTAACTTCTCTAACTTCCCACCAAATTTAAATCTAATAGATTTCCAAGGTGATGCATTTTCCTCAAACAATGTTCTTCAGCTTACAAAAAACCAACTTGATGGCCCCATCACGAGCAGCGTGGGGCGCGCTTCGTTCAACCAACCGGTGAAGCTttatgacaaaaaaacaaaaaagctaACTGATTTCACAACACATTTCACCTTTGTTATGAAAGCCGTTAACACATCGCTGTTCGGTGATGGTTTATCATTCTTCATCGCTCCGTTTCAATCCGATATCCCGAAAAACTCATGGGGTGGTTACCTTGGTTTATTCAATGAGGACTCTGCATTCAACACTAGTAAAAACCAAATAGTAGCTGTTGAATTTGATAGTTTTATGAATGATTGGGATCCAAGCTTTGATCATGTTGGAATCAATGTTAATTCGATTCAATCGGTTCAAAATGTATCTTGGGAGAGCAGCATTAAAAACGGTTTGATCGGGAATGCTTGGATATCATAtaactcaacaacaaaaaaccttTCTGTTTTTCTTACTTATGCTAAGAATCCAATTTTCCAAGGAAACTCTAGTCTTTCACATGTTATTGATTTGAGTGAAGTTTTGCCTGAATATGTTAGGATTGCTGCTACTGGTCAATGGATTGAAATACACAATATTCTATCTTGGTCATTCAATTCAACTATGGAAAATGGTTTATTATGGTTCAATTtttggagaaaaagaaaagggttATATAGGGGTAAAATGGACAATAATAGAGATATTGATGGTTCTATAGATGAAGCTGAATTTGAGAGAGGAACTGGTCCAAAAAAATTCACTTACAAAGTACTAAGTAATGCAACAAATGGTTTTGATGAAAAAGGGAAACTTGGAGAAGGTGGATTTGGAGGTGATTTTGGTCTTGCAAGATTAGTGGATCATGAACTTGGTTCACAAACAACTGTTTTGGCAGGTACTATGGGATATTTAGCACCTGAATGTGTTACAACTGGAAAATCAAGTAAAGAATCTGATGTTTATAGTTTTGGTGTTGTTGCACTTGAAATAGTAAGTGGTAGAAGATCTATTGAACCAAAAGAAGATGCTAAGAAAGTTAGGCTTGTGGAATGGATTTGGGATTTATATGGTAAAGGTGAATTATTTGAAGGTGTTGATAAAGGGTTAAATTTGGAATTTGATGAAAAGCAAATGGATCTTCCTTCAAAATTTCCTGTTCCTGTGTACTTTGCACCTCCTATGGAGATGTGTAGATTTTCATCAACTTTTGATGGTCTCACAAACATAACTAATGGATCAACTACTTATTCATCATTGTCAGCTGGGTCTAGAAAATCTTTATTGTAG 1479 0.3374 MAICTYAYHYNQTKKTLISMLIIIFTLFYAFFNPAAAKSLSFNFSNFPPNLNLIDFQGDAFSSNNVLQLTKNQLDGPITSSVGRASFNQPVKLYDKKTKKLTDFTTHFTFVMKAVNTSLFGDGLSFFIAPFQSDIPKNSWGGYLGLFNEDSAFNTSKNQIVAVEFDSFMNDWDPSFDHVGINVNSIQSVQNVSWESSIKNGLIGNAWISYNSTTKNLSVFLTYAKNPIFQGNSSLSHVIDLSEVLPEYVRIAATGQWIEIHNILSWSFNSTMENGLLWFNFWRKRKGLYRGKMDNNRDIDGSIDEAEFERGTGPKKFTYKVLSNATNGFDEKGKLGEGGFGGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEIVSGRRSIEPKEDAKKVRLVEWIWDLYGKGELFEGVDKGLNLEFDEKQMDLPSKFPVPVYFAPPMEMCRFSSTFDGLTNITNGSTTYSSLSAGSRKSLL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03003 492 PANTHER - 275 342 - -
Tsu04g03003 492 PANTHER - 342 443 - -
Tsu04g03003 492 PANTHER - 31 274 - -
Tsu04g03003 492 Gene3D - 37 276 - -
Tsu04g03003 492 ProSiteProfiles Protein kinase domain profile. 76 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03003 492 ProSitePatterns Legume lectins beta-chain signature. 161 167 IPR019825 -
Tsu04g03003 492 Gene3D Transferase(Phosphotransferase) domain 1 333 448 - -
Tsu04g03003 492 PANTHER RECEPTOR LECTIN KINASE 275 342 - -
Tsu04g03003 492 PANTHER RECEPTOR LECTIN KINASE 31 274 - -
Tsu04g03003 492 PANTHER RECEPTOR LECTIN KINASE 342 443 - -
Tsu04g03003 492 SUPERFAMILY Protein kinase-like (PK-like) 342 440 IPR011009 -
Tsu04g03003 492 Pfam Protein tyrosine and serine/threonine kinase 342 408 IPR001245 GO:0004672|GO:0006468
Tsu04g03003 492 SUPERFAMILY Concanavalin A-like lectins/glucanases 38 273 IPR013320 -
Tsu04g03003 492 CDD lectin_legume_LecRK_Arcelin_ConA 40 272 IPR001220 GO:0030246
Tsu04g03003 492 Pfam Legume lectin domain 39 272 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03003 Tsu-Chr4 37083139 37086437 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03003 342 443 Receptor kinase-like Gene Family AT5G10530 60.952 5.24e-33 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu04g03003 Lectin_legB 6e-63 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03003 - - gmx:100791518 410.609